Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2020

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2019: 10387 - K07088 K07088 uncharacterized protein, at 760625 to 762571 10387 mRNA_2020: 10388 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 762718 to 765022 10388 mRNA_2021: 10389 - BLAST deacetylase-like protein [Drechmeria coniospora], at 765421 to 766356 10389

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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762,049 + 10387 mRNA_2019 0.73 -0.8
762,168 + 10387 mRNA_2019 0.79 1.2
762,183 - 10387 mRNA_2019 0.80 1.2
762,185 + 10387 mRNA_2019 0.80 2.1
762,552 - 1.9
762,590 + -0.3
762,814 + -1.0
762,874 + -1.0
762,942 - -0.6
762,985 + 10388 mRNA_2020 0.12 1.6
763,128 - 10388 mRNA_2020 0.18 -1.1
763,475 - 10388 mRNA_2020 0.33 0.9
763,607 - 10388 mRNA_2020 0.39 -0.5
763,736 - 10388 mRNA_2020 0.44 -0.2
763,743 + 10388 mRNA_2020 0.44 -0.0
763,766 + 10388 mRNA_2020 0.45 -0.2
764,195 + 10388 mRNA_2020 0.64 -1.0
764,689 - 10388 mRNA_2020 0.86 1.1
764,737 + 10388 mRNA_2020 0.88 0.7
764,919 + -0.8
764,921 + -0.1
764,924 - 0.1
764,931 - 1.2
764,945 + -0.8
764,964 + -0.6
765,085 - -0.1
765,092 + 0.9
765,096 - -1.3
765,400 + 0.1
765,403 + 0.3
765,509 - -0.8
765,699 - 10389 mRNA_2021 0.30 0.7