Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2017

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748205 to 751738 10384 mRNA_2017: 10385 - K12600 SKI3, TTC37 superkiller protein 3, at 752495 to 757859 10385 mRNA_2018: 10386 - K09554 CDC37 cell division cycle protein 37, at 758563 to 760344 10386

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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751,596 + 2.5
751,605 + -0.1
751,657 - 0.1
751,683 - -0.1
751,785 + 0.3
751,962 - -0.6
752,039 - 2.0
752,134 + 1.8
752,208 - -0.5
752,333 + 0.7
752,351 - 1.1
752,371 - 0.8
752,533 + -2.2
752,558 - 0.8
752,621 - -0.3
752,704 + -0.2
752,729 + -3.0
752,820 - -1.3
752,823 - 1.5
753,529 - 10385 mRNA_2017 0.19 0.5
754,120 + 10385 mRNA_2017 0.30 -0.5
755,345 - 10385 mRNA_2017 0.53 -1.3
755,454 - 10385 mRNA_2017 0.55 -0.6
755,720 + 10385 mRNA_2017 0.60 0.0
755,844 - 10385 mRNA_2017 0.62 -1.5
756,220 - 10385 mRNA_2017 0.69 -0.5
756,227 + 10385 mRNA_2017 0.70 -2.5
757,759 + 1.0
757,816 - -2.6
757,879 + -0.4
757,883 - -1.3
757,911 + -1.5
758,042 - 0.0
758,055 + 1.8
758,187 + 1.4
758,196 + 1.1
758,205 - 1.1
758,214 + 1.7
758,335 - -0.1