Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2006

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720750 to 723688 10373 mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724216 to 728973 10374 mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729212 to 731398 10375

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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723,328 - 10373 mRNA_2005 0.88 0.4
723,454 + -0.9
723,485 - -0.3
723,496 - 0.1
723,500 + -0.7
723,594 - 0.8
723,628 + 2.3
723,648 - -0.2
723,650 + -0.2
723,655 + 0.7
723,755 - 1.7
723,760 + -0.6
723,768 - -1.4
723,768 - 0.5
723,777 - 0.3
723,778 + 0.5
723,781 + 3.0
723,829 + 0.5
723,838 + 0.2
723,843 - 0.6
723,852 + 0.8
723,862 + -0.5
723,863 - 0.3
723,993 - -1.5
723,997 - -0.7
724,061 + 1.3
724,068 - 1.8
724,073 + 0.7
724,101 + 0.9
724,111 - -2.1
724,195 - 1.9
724,208 - -0.2
724,213 - 1.0
724,226 - 0.4
724,229 + -0.5
724,233 - 0.1
724,235 + 0.7
724,245 - -0.3
724,247 - 0.8
724,518 - -1.6
724,547 + -1.0
724,575 + -1.1
724,786 - 10374 mRNA_2006 0.12 -1.0
725,233 - 10374 mRNA_2006 0.21 1.1
725,373 + 10374 mRNA_2006 0.24 -1.6
725,523 - 10374 mRNA_2006 0.27 -0.0
725,561 - 10374 mRNA_2006 0.28 0.5
725,669 + 10374 mRNA_2006 0.31 -1.2
725,785 + 10374 mRNA_2006 0.33 -1.1
725,901 - 10374 mRNA_2006 0.35 1.7
725,969 - 10374 mRNA_2006 0.37 0.3
726,098 + 10374 mRNA_2006 0.40 0.9
726,186 + 10374 mRNA_2006 0.41 1.0
726,462 + 10374 mRNA_2006 0.47 -1.2
726,934 + 10374 mRNA_2006 0.57 1.4
727,182 - 10374 mRNA_2006 0.62 -3.2
727,190 + 10374 mRNA_2006 0.63 -0.8
727,742 - 10374 mRNA_2006 0.74 -0.3
727,836 + 10374 mRNA_2006 0.76 1.6
728,149 + 10374 mRNA_2006 0.83 2.0
728,685 + 0.0
729,222 - 1.3
729,249 + 0.1
729,263 + -2.2
729,315 + 0.2
729,355 - -0.0
729,459 + 10375 mRNA_2007 0.11 0.2
729,763 + 10375 mRNA_2007 0.25 0.3
729,888 - 10375 mRNA_2007 0.31 1.6