Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2005

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2004: 10372 - Hypothetical Protein, at 718267 to 719987 10372 mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720750 to 723688 10373 mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724216 to 728973 10374

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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719,842 - 3.4
720,536 - 0.6
720,891 + 2.1
721,153 - 10373 mRNA_2005 0.14 -1.3
721,868 - 10373 mRNA_2005 0.38 1.7
722,315 - 10373 mRNA_2005 0.53 0.3
723,328 - 10373 mRNA_2005 0.88 0.4
723,454 + -0.9
723,485 - -0.3
723,496 - 0.1
723,500 + -0.7
723,594 - 0.8
723,628 + 2.3
723,648 - -0.2
723,650 + -0.2
723,655 + 0.7
723,755 - 1.7
723,760 + -0.6
723,768 - -1.4
723,768 - 0.5
723,777 - 0.3
723,778 + 0.5
723,781 + 3.0
723,829 + 0.5
723,838 + 0.2
723,843 - 0.6
723,852 + 0.8
723,862 + -0.5
723,863 - 0.3
723,993 - -1.5
723,997 - -0.7
724,061 + 1.3
724,068 - 1.8
724,073 + 0.7
724,101 + 0.9
724,111 - -2.1
724,195 - 1.9
724,208 - -0.2
724,213 - 1.0
724,226 - 0.4
724,229 + -0.5
724,233 - 0.1
724,235 + 0.7
724,245 - -0.3
724,247 - 0.8
724,518 - -1.6
724,547 + -1.0
724,575 + -1.1