Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2003

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712088 to 714509 10370 mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714669 to 717655 10371 mRNA_2004: 10372 - Hypothetical Protein, at 718267 to 719987 10372

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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714,556 - -1.3
714,566 - 5.7
714,571 - 1.9
714,575 - 1.3
714,577 + -0.3
714,578 + -1.2
714,580 - 0.4
714,580 - -2.8
714,580 - -0.0
714,580 - 0.4
714,584 - -1.1
714,588 + 0.4
714,601 - 1.9
714,602 + 1.0
714,607 + 1.1
714,643 + 1.6
714,644 + -1.4
714,645 + 2.0
714,649 - 0.5
714,662 + 1.2
714,664 - 0.5
714,671 - 0.9
714,679 - 0.7
714,770 + 1.5
714,776 - 0.5
714,795 + 0.7
715,485 + 10371 mRNA_2003 0.27 -0.2
715,510 + 10371 mRNA_2003 0.28 1.7
715,620 - 10371 mRNA_2003 0.32 0.2
715,635 - 10371 mRNA_2003 0.32 -0.3
715,896 + 10371 mRNA_2003 0.41 -0.1
715,925 - 10371 mRNA_2003 0.42 0.6
715,926 + 10371 mRNA_2003 0.42 0.4
715,929 + 10371 mRNA_2003 0.42 -1.5
716,215 + 10371 mRNA_2003 0.52 0.2
716,645 - 10371 mRNA_2003 0.66 -0.3
717,067 - 10371 mRNA_2003 0.80 -0.4
717,224 - 10371 mRNA_2003 0.86 1.6
717,361 - 0.1
717,806 - 3.2
717,947 - 1.6
717,962 + 0.5
717,971 + 0.8
718,113 - -0.1
718,130 + -0.3
718,424 + 2.9