Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1996

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1995: 10363 - KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b, at 699690 to 700377 10363 mRNA_1996: 10364 - KOG0379 Kelch repeat-containing proteins, at 700597 to 701909 10364 mRNA_1997: 10365 - KOG0627 Heat shock transcription factor, at 702510 to 703691 10365

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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699,707 + -2.4
699,843 - 10363 mRNA_1995 0.22 0.1
699,942 - 10363 mRNA_1995 0.37 0.1
700,004 + 10363 mRNA_1995 0.46 0.9
700,441 + 0.1
700,476 + 1.6
700,538 + 0.7
700,745 - 10364 mRNA_1996 0.11 -0.4
701,029 - 10364 mRNA_1996 0.33 0.1
701,042 - 10364 mRNA_1996 0.34 -0.5
701,185 + 10364 mRNA_1996 0.45 -0.5
701,454 + 10364 mRNA_1996 0.65 -0.3
701,862 - -0.3
701,888 - 1.7
701,905 - 0.8
701,921 + 0.8
701,926 + -0.5
701,961 - 0.4
701,988 + -0.2
702,084 - 1.0
702,089 - 0.2
702,091 + -0.3
702,234 - 0.3
702,236 - 1.1
702,243 - -0.2
702,274 + 0.3
702,282 + 0.7
702,309 - 1.1
702,333 - 3.4
702,341 - 1.5
702,354 + 0.8
702,364 + -2.9
702,365 - 0.8
702,368 + -1.5
702,380 + -0.0
702,384 + 1.6
702,408 + 1.4
702,481 + -0.5
702,500 - -1.5