Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1993

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1992: 10360 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 690779 to 693096 10360 mRNA_1993: 10361 - Hypothetical Protein, at 694051 to 694539 10361 mRNA_1994: 10362 - K03235 EF3, TEF3 elongation factor 3, at 695063 to 698759 10362

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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693,067 + 0.8
693,068 - 0.7
693,089 - 0.4
693,095 + 1.3
693,194 - -0.5
693,202 - -0.3
693,210 + 0.9
693,211 + -0.5
693,223 + -1.6
693,223 - 0.9
693,239 + 0.4
693,244 - -0.4
693,248 + 1.0
693,272 + 1.5
693,279 + 2.1
693,315 - -1.0
693,340 - 2.1
693,364 - -0.0
693,374 + 0.1
693,388 - 0.0
693,393 - -1.9
693,399 + 0.1
693,416 - 0.2
693,442 + -1.0
693,553 + 0.2
693,789 - -1.2
693,820 + 0.5
693,839 - 0.1
693,974 + -0.4
694,002 - -0.3
694,425 + 10361 mRNA_1993 0.76 2.7
694,428 - 10361 mRNA_1993 0.77 -1.6
694,463 - 10361 mRNA_1993 0.84 0.3
694,571 - 0.9
694,810 - 0.9
694,816 - -0.5
694,840 + 0.6
694,853 - -1.2
694,854 + -1.3
694,854 - 1.2
694,864 + -0.8
694,881 - -0.9
694,892 - -2.2
694,892 + -0.5
694,898 - 0.9
694,901 - -0.5
694,928 - 1.7
695,026 - -1.5
695,029 + -0.2
695,046 - 0.0