Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1982

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1981: 10349 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 665074 to 666880 10349 mRNA_1982: 10350 - HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503, at 667248 to 669066 10350 mRNA_1983: 10351 - K07213 ATOX1, ATX1, copZ, golB copper chaperone, at 670002 to 670488 10351

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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666,407 - 10349 mRNA_1981 0.74 -0.0
666,708 - 0.3
666,793 + -0.3
667,295 + -0.3
667,732 + 10350 mRNA_1982 0.27 -0.5
668,010 - 10350 mRNA_1982 0.42 -1.2
668,013 + 10350 mRNA_1982 0.42 1.0
668,133 - 10350 mRNA_1982 0.49 0.4
668,161 + 10350 mRNA_1982 0.50 0.2
668,451 - 10350 mRNA_1982 0.66 -1.3
668,915 - -0.2
669,221 + 2.2
669,788 - 1.4
669,929 - 0.3
669,932 - 2.6
669,942 + -1.9
669,943 + 0.4