Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1963

Experiments: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1962: 10330 - K00133 asd aspartate-semialdehyde dehydrogenase, at 617594 to 618818 10330 mRNA_1963: 10331 - K00767 nadC, QPRT nicotinate-nucleotide pyrophosphorylase (carboxylating), at 619421 to 620670 10331 mRNA_1964: 10332 - K01495 GCH1, folE GTP cyclohydrolase I, at 621166 to 622157 10332

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
619,005 + -1.6
619,060 - 1.8
619,174 + -1.5
619,181 - 0.3
619,181 - 2.9
619,183 - -0.6
619,185 - 1.5
619,191 - -0.3
619,208 + 0.1
619,209 + 1.0
619,373 + -0.5
619,396 - 0.0
619,497 - 2.4
619,497 + -0.4
619,500 + 0.6
619,504 - 0.8
619,799 - 10331 mRNA_1963 0.30 -0.1
619,830 + 10331 mRNA_1963 0.33 0.1
619,944 + 10331 mRNA_1963 0.42 -0.3
620,201 + 10331 mRNA_1963 0.62 0.1
620,215 - 10331 mRNA_1963 0.64 -0.6
620,230 + 10331 mRNA_1963 0.65 3.5
620,372 - 10331 mRNA_1963 0.76 0.9
620,377 + 10331 mRNA_1963 0.76 -2.1
620,389 + 10331 mRNA_1963 0.77 0.7
620,470 - 10331 mRNA_1963 0.84 0.5
620,499 - 10331 mRNA_1963 0.86 -0.8
620,649 + -0.8
620,801 - -1.7
620,802 + -1.0
620,946 + -0.9
620,960 - 0.6
621,070 + 0.5