Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1946

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1945: 10313 - Hypothetical Protein, at 574351 to 575148 10313 mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314 mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577345 to 578684 10315

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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574,139 - -0.7
574,157 - 1.8
574,163 - -1.1
574,169 - 0.9
574,169 - -0.1
574,172 + -0.2
574,173 + -0.1
574,175 + 2.3
574,178 - -0.9
574,183 + 0.2
574,191 + -0.4
574,193 + 1.6
574,193 + -0.3
574,289 - -0.9
574,384 + -0.2
574,450 - 10313 mRNA_1945 0.12 0.2
574,459 + 10313 mRNA_1945 0.14 -1.5
574,470 - 10313 mRNA_1945 0.15 0.7
574,475 + 10313 mRNA_1945 0.16 4.0
574,510 + 10313 mRNA_1945 0.20 1.1
574,572 + 10313 mRNA_1945 0.28 0.7
574,764 - 10313 mRNA_1945 0.52 2.2
574,803 + 10313 mRNA_1945 0.57 -1.1
575,060 - 10313 mRNA_1945 0.89 0.3
575,323 - 10314 mRNA_1946 0.10 0.0
575,481 + 10314 mRNA_1946 0.18 -0.7
575,652 - 10314 mRNA_1946 0.27 0.2
575,652 + 10314 mRNA_1946 0.27 0.7
576,687 + 10314 mRNA_1946 0.80 1.3
576,826 - 10314 mRNA_1946 0.87 -0.2
576,969 + -0.1
576,995 + 1.0
577,010 + 0.5
577,038 - 1.9
577,122 - -1.1
577,176 + -1.6
577,437 + 1.5
577,444 + -0.9
577,548 - 10315 mRNA_1947 0.15 -0.8
577,836 - 10315 mRNA_1947 0.37 0.5
577,838 + 10315 mRNA_1947 0.37 -1.4
577,851 - 10315 mRNA_1947 0.38 0.1
577,987 - 10315 mRNA_1947 0.48 -0.3