Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1945

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1944: 10312 - BLAST Respiratory supercomplex factor 2, mitochondrial [Cla..., at 572594 to 573767 10312 mRNA_1945: 10313 - Hypothetical Protein, at 574351 to 575148 10313 mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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573,437 + 10312 mRNA_1944 0.72 -1.4
573,707 - -0.9
573,716 + 2.3
573,743 - 0.5
573,794 - -1.3
573,832 + 2.2
573,837 + 0.3
573,841 - -0.1
573,846 - -0.5
573,851 + -3.4
573,852 - 0.4
573,855 - 1.1
573,868 - 0.1
573,869 - -1.9
573,870 - 1.6
573,870 + 1.7
573,876 - -0.5
573,882 - 0.9
573,884 + -0.2
573,884 + 0.6
573,890 - 0.3
573,897 + -0.8
573,897 + 0.2
573,903 + 0.8
573,905 + 0.9
573,916 - 0.3
573,917 + -0.1
573,932 - 0.0
573,948 + -1.9
573,968 - 0.0
573,970 - 0.6
574,033 + 0.9
574,034 - 0.1
574,139 - -0.7
574,157 - 1.8
574,163 - -1.1
574,169 - 0.9
574,169 - -0.1
574,172 + -0.2
574,173 + -0.1
574,175 + 2.3
574,178 - -0.9
574,183 + 0.2
574,191 + -0.4
574,193 + 1.6
574,193 + -0.3
574,289 - -0.9
574,384 + -0.2
574,450 - 10313 mRNA_1945 0.12 0.2
574,459 + 10313 mRNA_1945 0.14 -1.5
574,470 - 10313 mRNA_1945 0.15 0.7
574,475 + 10313 mRNA_1945 0.16 4.0
574,510 + 10313 mRNA_1945 0.20 1.1
574,572 + 10313 mRNA_1945 0.28 0.7
574,764 - 10313 mRNA_1945 0.52 2.2
574,803 + 10313 mRNA_1945 0.57 -1.1
575,060 - 10313 mRNA_1945 0.89 0.3
575,323 - 10314 mRNA_1946 0.10 0.0
575,481 + 10314 mRNA_1946 0.18 -0.7
575,652 - 10314 mRNA_1946 0.27 0.2
575,652 + 10314 mRNA_1946 0.27 0.7