Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1943

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310 mRNA_1943: 10311 - Hypothetical Protein, at 571138 to 572203 10311 mRNA_1944: 10312 - BLAST Respiratory supercomplex factor 2, mitochondrial [Cla..., at 572594 to 573767 10312

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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570,203 - 10310 mRNA_1942 0.80 -2.4
570,702 - 0.0
570,794 - 0.2
570,929 - 1.2
571,211 + 0.6
571,258 + 10311 mRNA_1943 0.11 -0.8
571,348 - 10311 mRNA_1943 0.20 0.1
571,417 - 10311 mRNA_1943 0.26 -0.6
571,420 - 10311 mRNA_1943 0.26 0.5
571,492 - 10311 mRNA_1943 0.33 -1.0
571,496 - 10311 mRNA_1943 0.34 -0.6
571,499 + 10311 mRNA_1943 0.34 0.4
571,638 + 10311 mRNA_1943 0.47 -1.6
571,785 - 10311 mRNA_1943 0.61 0.4
571,854 - 10311 mRNA_1943 0.67 0.0
571,924 + 10311 mRNA_1943 0.74 -1.6
571,930 - 10311 mRNA_1943 0.74 -0.8
571,979 - 10311 mRNA_1943 0.79 0.9
572,061 - 10311 mRNA_1943 0.87 1.0
572,098 - -0.4
572,114 + 0.9
572,230 - -0.1
572,257 + -0.7
572,384 - -0.2
572,397 + 1.6
572,400 + 0.9
572,511 - -0.4
572,541 - -0.0
572,560 + 2.5
572,685 - 3.0
572,940 - 10312 mRNA_1944 0.29 0.6
572,974 - 10312 mRNA_1944 0.32 -0.8
573,040 + 10312 mRNA_1944 0.38 0.7
573,063 + 10312 mRNA_1944 0.40 0.3
573,132 - 10312 mRNA_1944 0.46 -0.5