Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1942

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309 mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310 mRNA_1943: 10311 - Hypothetical Protein, at 571138 to 572203 10311

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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566,514 - 10309 mRNA_1941 0.82 1.0
566,641 - 10309 mRNA_1941 0.87 0.9
566,650 + 10309 mRNA_1941 0.87 0.2
566,663 - 10309 mRNA_1941 0.88 0.5
566,689 - 10309 mRNA_1941 0.89 0.4
566,882 - 2.1
566,995 + -0.1
567,101 - 1.4
567,109 - 2.5
567,112 + 1.2
567,232 - -1.0
567,253 + -1.4
567,376 - 0.2
567,399 - 2.4
567,510 + -0.5
567,536 + 0.4
567,546 + 2.4
567,547 + -0.6
567,552 - 0.6
567,699 - 1.7
567,702 + 1.5
568,004 - 10310 mRNA_1942 0.16 -1.9
568,465 + 10310 mRNA_1942 0.30 0.6
568,808 - 10310 mRNA_1942 0.40 0.7
568,809 + 10310 mRNA_1942 0.40 -0.1
569,173 + 10310 mRNA_1942 0.50 1.4
569,194 + 10310 mRNA_1942 0.51 1.5
569,754 - 10310 mRNA_1942 0.67 -1.1
570,017 + 10310 mRNA_1942 0.75 0.0
570,203 - 10310 mRNA_1942 0.80 -2.4
570,702 - 0.0
570,794 - 0.2
570,929 - 1.2
571,211 + 0.6
571,258 + 10311 mRNA_1943 0.11 -0.8
571,348 - 10311 mRNA_1943 0.20 0.1
571,417 - 10311 mRNA_1943 0.26 -0.6
571,420 - 10311 mRNA_1943 0.26 0.5
571,492 - 10311 mRNA_1943 0.33 -1.0
571,496 - 10311 mRNA_1943 0.34 -0.6
571,499 + 10311 mRNA_1943 0.34 0.4
571,638 + 10311 mRNA_1943 0.47 -1.6
571,785 - 10311 mRNA_1943 0.61 0.4
571,854 - 10311 mRNA_1943 0.67 0.0