Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1938

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554394 to 556031 10305 mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556583 to 558262 10306 mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603 10307

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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556,233 + -2.1
556,233 - -0.5
556,259 - 1.1
556,395 - -0.2
556,401 - 0.2
556,431 + 0.2
556,535 + 1.9
556,538 + 0.6
556,546 + -0.3
556,691 - -2.1
556,879 - 10306 mRNA_1938 0.18 -0.1
556,948 + 10306 mRNA_1938 0.22 0.5
556,995 + 10306 mRNA_1938 0.25 2.3
557,139 + 10306 mRNA_1938 0.33 0.9
557,237 - 10306 mRNA_1938 0.39 -1.9
557,316 + 10306 mRNA_1938 0.44 2.0
557,589 + 10306 mRNA_1938 0.60 0.2
557,738 - 10306 mRNA_1938 0.69 -0.2
557,848 + 10306 mRNA_1938 0.75 -0.2
558,163 + 3.0
558,268 + -1.3
558,272 - 1.3
558,618 - -0.4
559,072 + 10307 mRNA_1939 0.24 -0.2
559,223 - 10307 mRNA_1939 0.32 -0.3
559,228 + 10307 mRNA_1939 0.32 0.3