Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1936

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1935: 10303 - K00654 SPT serine palmitoyltransferase, at 548678 to 550878 10303 mRNA_1936: 10304 - K07424 CYP3A cytochrome P450, family 3, subfamily A, at 551220 to 553834 10304 mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554394 to 556031 10305

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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550,946 - 0.5
551,289 + -1.3
551,529 - 10304 mRNA_1936 0.12 1.0
551,549 - 10304 mRNA_1936 0.13 -1.1
551,571 + 10304 mRNA_1936 0.13 1.6
551,985 + 10304 mRNA_1936 0.29 -0.7
552,989 - 10304 mRNA_1936 0.68 0.5
553,157 - 10304 mRNA_1936 0.74 -0.5
553,466 + 10304 mRNA_1936 0.86 -1.2
553,727 - 0.6
553,734 - 0.9
553,865 + -0.2
553,868 + 0.1
553,890 - 0.7
553,893 + -0.2
553,903 + 0.1
553,909 - -0.6
553,916 + 1.2
553,945 - -0.4
553,981 - -2.2
554,011 + 0.2
554,025 + -0.4
554,029 - 0.2
554,038 - -0.3
554,040 + 0.6
554,040 + -0.8
554,046 + 0.2
554,064 + 0.6
554,069 + -0.4
554,074 + -0.6
554,084 + 0.9
554,096 + 0.1
554,105 + 0.2
554,147 - -0.2
554,147 - -0.8
554,149 - 0.1
554,165 - -0.5
554,165 - -0.4
554,165 + 2.6
554,174 - 0.2
554,185 + 3.1
554,326 - 0.5
554,334 - 0.3
554,336 + -1.1
554,349 + 0.5
554,350 + 0.7
554,361 + -0.2
554,367 + 0.9
554,470 + -0.3
554,816 - 10305 mRNA_1937 0.26 -1.3