Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1934

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1933: 10301 - Hypothetical Protein, at 545451 to 545690 10301 mRNA_1934: 10302 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 546191 to 548410 10302 mRNA_1935: 10303 - K00654 SPT serine palmitoyltransferase, at 548678 to 550878 10303

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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545,378 + 0.5
545,507 - 10301 mRNA_1933 0.23 0.2
545,522 + 10301 mRNA_1933 0.30 0.2
545,531 + 10301 mRNA_1933 0.33 -0.7
545,539 + 10301 mRNA_1933 0.37 2.4
545,627 + 10301 mRNA_1933 0.73 0.3
545,632 + 10301 mRNA_1933 0.75 0.3
545,656 - 10301 mRNA_1933 0.85 -0.4
545,677 + 0.2
545,678 + 1.2
545,789 - 0.4
545,801 - -0.1
545,804 - -0.5
545,808 + -0.7
545,808 + 0.4
545,815 - 0.5
545,818 + -0.3
545,819 + 1.0
545,843 + -0.6
545,845 + 0.4
545,846 + 0.8
545,869 - 2.3
545,932 + -0.7
545,965 - -0.0
545,983 + -0.5
545,986 - -0.8
546,008 - 1.7
546,269 - 1.4
546,683 + 10302 mRNA_1934 0.22 -0.4
546,687 - 10302 mRNA_1934 0.22 0.1
546,840 - 10302 mRNA_1934 0.29 0.4
546,842 + 10302 mRNA_1934 0.29 1.5
546,873 - 10302 mRNA_1934 0.31 0.1
547,097 - 10302 mRNA_1934 0.41 2.0
547,106 + 10302 mRNA_1934 0.41 2.2
547,595 - 10302 mRNA_1934 0.63 0.5
547,684 + 10302 mRNA_1934 0.67 1.9
547,713 - 10302 mRNA_1934 0.69 -0.4
547,724 - 10302 mRNA_1934 0.69 0.4
548,003 + 10302 mRNA_1934 0.82 0.0
548,007 - 10302 mRNA_1934 0.82 0.4
548,051 + 10302 mRNA_1934 0.84 0.7
548,162 - 10302 mRNA_1934 0.89 0.5
548,168 - 10302 mRNA_1934 0.89 2.8
548,170 + 10302 mRNA_1934 0.89 2.3
548,214 + -0.2
548,301 - 2.1
548,304 + 0.5
548,311 - 0.5
548,317 - 0.4
548,322 - 0.9
548,464 - 0.7
548,467 - 0.9
548,472 + 1.8
548,472 + 2.8
548,482 - -0.2
548,585 - 0.4
548,589 + -0.3
548,589 - 0.6
548,591 + 0.1
548,607 + -0.2
548,611 - 0.4
548,613 - -0.5
548,613 + -1.0
548,617 - -0.3
548,618 + -1.2
548,619 + 1.3
548,619 + 0.6