Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1929

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1929: 10297 - K07880 RAB4B Ras-related protein Rab-4B, at 535979 to 537358 10297 mRNA_1930: 10298 - KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains, at 537705 to 541731 10298

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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534,994 + -2.7
535,132 - -0.8
535,307 - 0.4
535,312 + 0.7
535,441 - 1.3
535,581 - -0.5
535,581 + 1.7
535,605 + -0.2
535,716 - 1.4
535,726 - -1.7
535,732 - 1.6
535,733 + 1.8
535,740 + -0.8
535,745 - 1.0
535,745 - -0.9
535,755 + -0.9
535,755 + -0.6
535,757 - -0.2
535,760 - -0.5
535,799 - 1.4
535,888 + 0.8
535,890 + -0.6
535,894 - 0.1
535,894 - 0.7
535,897 + -0.3
535,897 + 0.5
535,902 - -1.6
535,908 + 2.4
535,910 + 0.8
535,912 - 1.4
535,917 + 0.3
535,971 + -0.7
536,039 + 0.9
536,043 - 1.9
536,061 - 0.3
536,067 - 0.2
536,070 + 0.5
536,081 - -0.2
536,212 + 10297 mRNA_1929 0.17 1.6
536,498 - 10297 mRNA_1929 0.38 1.7
536,770 - 10297 mRNA_1929 0.57 -0.6
536,822 + 10297 mRNA_1929 0.61 -1.0
536,956 - 10297 mRNA_1929 0.71 -1.5
537,037 - 10297 mRNA_1929 0.77 2.0
537,205 + 10297 mRNA_1929 0.89 0.9
537,208 + 10297 mRNA_1929 0.89 0.5
537,332 + -0.0
537,497 - -0.7
537,497 + -1.6
537,512 - -0.6
537,584 - -0.4
537,628 - -0.0
537,630 - 1.3
537,634 + 2.7
537,638 - -1.2
537,647 - 1.3
537,648 + -1.6
537,649 - -0.6
537,653 - 0.3
537,653 + -0.6
537,655 + 0.7
537,657 - 0.1
537,666 - 0.2
537,668 + 1.7