Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1927

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525365 to 527827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528400 to 533209 10295

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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527,414 + 10294 mRNA_1926 0.83 1.2
527,439 + 10294 mRNA_1926 0.84 -2.5
527,441 - 10294 mRNA_1926 0.84 -1.4
527,463 + 10294 mRNA_1926 0.85 0.5
527,611 - -0.2
527,732 + 0.2
527,735 - -0.0
527,742 + 1.4
527,838 - 0.5
527,851 - -0.5
527,865 - -1.6
527,869 - 0.9
527,889 - 1.1
527,894 + 1.8
527,942 - 0.5
527,945 - 2.1
528,044 - 0.3
528,070 - 0.1
528,086 + -0.3
528,349 - 1.7
528,500 + 1.7
528,597 + 0.3
528,642 - -1.5
528,903 - 10295 mRNA_1927 0.10 -0.1
528,935 + 10295 mRNA_1927 0.11 0.9
529,048 + 10295 mRNA_1927 0.13 0.7
529,945 - 10295 mRNA_1927 0.32 -1.1
529,953 + 10295 mRNA_1927 0.32 -0.2
529,962 - 10295 mRNA_1927 0.32 0.3
530,126 - 10295 mRNA_1927 0.36 -0.8
530,199 - 10295 mRNA_1927 0.37 -1.1
530,266 + 10295 mRNA_1927 0.39 0.2
530,377 + 10295 mRNA_1927 0.41 0.7
530,511 - 10295 mRNA_1927 0.44 0.5
530,661 + 10295 mRNA_1927 0.47 -0.3
530,804 - 10295 mRNA_1927 0.50 -0.5
530,848 + 10295 mRNA_1927 0.51 -0.8
531,254 - 10295 mRNA_1927 0.59 1.2
531,465 + 10295 mRNA_1927 0.64 1.5
531,554 - 10295 mRNA_1927 0.66 -1.2
531,582 + 10295 mRNA_1927 0.66 2.1
531,814 - 10295 mRNA_1927 0.71 -0.3
532,420 + 10295 mRNA_1927 0.84 2.4
532,541 - 10295 mRNA_1927 0.86 -1.3
532,542 - 10295 mRNA_1927 0.86 0.6
532,547 + 10295 mRNA_1927 0.86 0.2
532,838 - 1.1
532,854 + 1.0
532,857 + 2.9
532,980 + 0.3
533,002 - 1.8
533,011 + 0.2
533,013 + 0.3
533,015 - 1.4
533,017 - -0.2
533,138 + 0.0
533,154 - 0.9
533,160 - -0.7
533,173 - 1.6
533,294 + 1.6
533,297 + 1.7
533,299 - 1.0
533,316 - 2.0
533,346 - 0.7
533,439 - 0.5
533,449 - 0.5
533,452 - -2.2
533,460 - -0.3
533,465 + 0.5
533,467 - -0.0
533,471 - 0.2
533,476 - -1.2
533,479 - 0.2
533,577 + -0.0
533,582 - 0.0
533,586 - 1.3
533,590 + -1.8
533,591 + 1.7
533,600 - 0.9
533,615 - -0.1
533,617 - -0.2
533,619 + 1.6
533,621 + -1.4
533,621 + -3.5
533,624 + 0.2
533,628 + -0.2
533,650 - 1.1
533,665 - 0.2
533,671 - 1.5
533,675 + -0.5
533,677 + 0.9
533,677 - 0.9
533,677 - 1.9
533,678 - -0.4
533,680 + 1.7
533,682 - 0.5
533,687 + 2.5
533,696 - -0.2
533,699 - 0.4
533,700 + -0.1
533,701 + 0.5
533,704 + -0.2
533,705 - 0.5
533,717 - -0.2
533,721 - 0.6
533,721 + 2.1
533,722 + 0.4
533,722 + 0.9
533,765 + 0.9
533,783 + -0.3
533,792 + 1.4
533,793 - -2.4
533,814 + 1.2
533,816 - 0.6
533,822 + 0.7
533,828 - 2.3
533,843 + 1.6
533,844 - -1.9
533,855 + -0.7
533,863 + 2.1
533,864 - -0.1
533,868 + 0.7
533,879 + 1.0
533,880 - 0.9
533,892 + 1.0
533,897 + 0.2
533,897 + 1.0
533,899 + 0.5
533,903 + -0.4
533,904 + 0.5
533,905 + -0.6
533,927 - 0.0
533,931 + -0.7
533,936 + 0.3
533,938 + 0.0
533,941 + 0.5
533,957 + 0.3
534,017 - 0.2
534,017 - -0.2
534,033 + 0.3
534,047 + 1.0
534,049 - -1.6
534,053 - 0.4
534,056 + 0.2
534,057 + -0.1
534,062 - -0.4
534,063 + 0.8
534,066 + 0.8
534,069 + 0.1
534,072 + -0.4
534,075 - 1.7
534,077 - -0.1
534,077 - -0.1
534,081 + -0.4
534,086 - -0.8
534,088 - 0.6
534,091 + 2.6
534,093 - 0.5
534,095 - 1.5
534,096 + -0.0
534,101 + 1.0
534,110 + 0.8