Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1914

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1913: 10281 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 503193 to 504426 10281 mRNA_1914: 10282 - K07942 ARL1 ADP-ribosylation factor-like protein 1, at 504736 to 505677 10282 mRNA_1915: 10283 - K03063 PSMC4, RPT3 26S proteasome regulatory subunit T3, at 506230 to 507925 10283

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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504,493 - 1.2
504,499 - 1.5
504,507 + -0.3
504,526 + 0.2
504,537 + 0.3
504,645 + 1.0
504,651 + 1.0
504,659 - 1.3
504,668 + -1.5
504,792 + 0.6
504,810 + 0.7
504,942 - 10282 mRNA_1914 0.22 0.7
505,404 - 10282 mRNA_1914 0.71 0.5
505,802 + 0.1
505,829 - -0.3
505,970 - -0.4
505,972 + -0.3
505,981 + 0.7
505,983 - -1.9
506,160 - -0.8