Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1901

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464695 to 468117 10268 mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468442 to 470059 10269 mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470180 to 472538 10270

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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467,464 + 10268 mRNA_1900 0.81 -0.4
467,570 + 10268 mRNA_1900 0.84 0.4
467,590 + 10268 mRNA_1900 0.85 1.3
467,733 - 10268 mRNA_1900 0.89 2.2
468,105 - -0.1
468,209 + -0.0
468,247 - 1.2
468,373 - 0.4
468,375 + 0.7
468,382 + 0.5
468,383 - -0.1
469,707 + 10269 mRNA_1901 0.78 0.3
469,797 - 10269 mRNA_1901 0.84 1.9
469,970 - 0.5
469,975 + 0.2
470,044 - 0.8
470,133 - -0.7
470,202 - 1.3
470,382 - -0.2
470,383 - 0.2
470,438 + 10270 mRNA_1902 0.11 -1.2
470,454 - 10270 mRNA_1902 0.12 0.5