Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1888

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1887: 10255 - K14823 EBP2, EBNA1BP2 rRNA-processing protein EBP2, at 439280 to 440428 10255 mRNA_1888: 10256 - HMMPfam-Protein of unknown function (DUF2423)-PF10338, at 441171 to 441971 10256 mRNA_1889: 10257 - Hypothetical Protein, at 442061 to 442321 10257 mRNA_1890: 10258 - Hypothetical Protein, at 442391 to 442819 10258

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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440,939 + 0.6
440,959 + -0.1
441,079 + 1.7
441,089 + 1.3
441,116 - 0.9
441,254 + 10256 mRNA_1888 0.10 0.2
441,395 + 10256 mRNA_1888 0.28 -0.7
441,540 - 10256 mRNA_1888 0.46 -0.7
441,677 + 10256 mRNA_1888 0.63 -2.4
441,942 + 0.6
441,963 + 0.7
441,975 + 0.5
441,976 + -1.5
441,977 + -0.1
441,977 - 0.3
441,992 + 3.1
442,113 + 10257 mRNA_1889 0.20 -0.7
442,127 + 10257 mRNA_1889 0.25 0.1
442,128 - 10257 mRNA_1889 0.26 -0.3
442,129 - 10257 mRNA_1889 0.26 -0.4
442,133 + 10257 mRNA_1889 0.28 0.6
442,152 + 10257 mRNA_1889 0.35 1.2
442,165 + 10257 mRNA_1889 0.40 -0.8
442,172 - 10257 mRNA_1889 0.43 -0.1
442,177 + 10257 mRNA_1889 0.44 -0.8
442,180 - 10257 mRNA_1889 0.46 -0.3
442,183 - 10257 mRNA_1889 0.47 -0.4
442,210 + 10257 mRNA_1889 0.57 -0.2
442,221 - 10257 mRNA_1889 0.61 0.3
442,222 - 10257 mRNA_1889 0.62 3.5
442,227 - 10257 mRNA_1889 0.64 0.2
442,230 - 10257 mRNA_1889 0.65 0.7
442,231 - 10257 mRNA_1889 0.65 -0.2
442,233 + 10257 mRNA_1889 0.66 0.4
442,234 + 10257 mRNA_1889 0.66 0.0
442,234 - 10257 mRNA_1889 0.66 -1.4
442,234 + 10257 mRNA_1889 0.66 -0.2
442,236 - 10257 mRNA_1889 0.67 -0.4
442,237 - 10257 mRNA_1889 0.67 0.2
442,238 - 10257 mRNA_1889 0.68 1.5
442,240 + 10257 mRNA_1889 0.69 0.4
442,240 + 10257 mRNA_1889 0.69 0.9
442,246 + 10257 mRNA_1889 0.71 0.0
442,249 + 10257 mRNA_1889 0.72 0.5
442,274 - 10257 mRNA_1889 0.82 0.6
442,275 - 10257 mRNA_1889 0.82 -0.8
442,276 + 10257 mRNA_1889 0.82 1.6
442,276 + 10257 mRNA_1889 0.82 -0.0
442,277 - 10257 mRNA_1889 0.83 -0.0
442,281 + 10257 mRNA_1889 0.84 0.9
442,281 - 10257 mRNA_1889 0.84 -0.6
442,281 - 10257 mRNA_1889 0.84 -0.0
442,290 - 10257 mRNA_1889 0.88 1.6
442,291 - 10257 mRNA_1889 0.88 1.1
442,293 - 10257 mRNA_1889 0.89 -1.3
442,293 + 10257 mRNA_1889 0.89 0.4
442,407 - -0.9
442,410 + 0.6
442,427 - -0.7
442,431 - 1.4
442,444 - 10258 mRNA_1890 0.12 -0.7
442,460 - 10258 mRNA_1890 0.16 0.5
442,466 + 10258 mRNA_1890 0.17 -0.1
442,553 + 10258 mRNA_1890 0.38 0.5
442,605 - 10258 mRNA_1890 0.50 1.2
442,623 + 10258 mRNA_1890 0.54 0.9
442,763 + 10258 mRNA_1890 0.87 0.8
442,919 - 0.4
442,927 + -1.4
442,927 + -0.9
442,946 + 1.7
442,947 + 0.1