Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1883

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428761 to 429844 10250 mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430168 to 431962 10251 mRNA_1884: 10252 - Hypothetical Protein, at 432578 to 433282 10252

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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430,062 + 0.4
430,062 - -0.4
430,063 - 0.9
430,068 - 1.3
430,069 + 0.9
430,072 + 1.8
430,138 - 0.5
430,206 - 0.8
430,213 - 0.5
430,218 + 2.9
430,635 - 10251 mRNA_1883 0.26 -0.6
430,649 + 10251 mRNA_1883 0.27 -0.2
430,830 - 10251 mRNA_1883 0.37 0.1
430,848 - 10251 mRNA_1883 0.38 0.9
430,935 - 10251 mRNA_1883 0.43 2.2
430,982 + 10251 mRNA_1883 0.45 1.0
431,077 + 10251 mRNA_1883 0.51 -0.6
431,514 - 10251 mRNA_1883 0.75 -0.1
431,546 + 10251 mRNA_1883 0.77 0.7
431,699 - 10251 mRNA_1883 0.85 -0.4
431,738 + 10251 mRNA_1883 0.87 -1.1
431,792 - 0.8
431,806 - -0.9
431,826 - -0.8
431,829 - 1.3
431,845 - 0.3
431,866 + -0.3
431,866 + 0.2
431,982 + -0.2
431,982 + 2.9
431,990 - 1.9
431,997 - -0.1
431,998 + 0.3
432,006 - -0.9
432,011 + 1.3
432,023 + 1.6
432,036 + -0.8
432,054 + 0.5
432,066 - 0.3
432,067 + 0.2
432,085 - 1.3
432,116 + -0.6
432,123 - 0.6
432,124 + 1.0
432,134 - 1.5
432,134 - -0.1
432,134 - -0.1
432,137 - 1.0
432,143 + -1.5
432,147 - -1.3
432,147 - 0.6
432,157 + 0.3
432,160 + -0.7
432,162 - -0.3
432,165 + -0.7
432,165 - -1.6
432,165 + -1.0
432,185 - -1.0
432,188 - 0.0
432,190 + -0.0
432,197 + -0.3
432,203 - 0.7
432,230 + 0.7
432,234 - 0.2
432,317 + 0.5
432,335 + 1.9
432,370 - 2.1
432,378 - 0.3
432,379 - 1.0
432,387 - 0.7
432,390 + 0.3
432,391 - 0.3
432,391 - -0.2
432,398 - 0.3
432,407 + 0.1
432,425 - 2.4
432,436 + 0.1
432,442 + 0.2
432,444 - 1.0
432,450 - 0.9
432,451 - 1.2
432,451 + 0.9
432,458 + -2.0
432,461 + 0.4
432,483 - 0.6
432,483 + -0.3
432,489 - 2.7
432,499 + 0.4
432,500 - 0.4
432,501 + -1.6
432,507 + -0.2
432,594 + -0.7
432,744 - 10252 mRNA_1884 0.24 -0.0
432,781 - 10252 mRNA_1884 0.29 0.5
432,934 + 10252 mRNA_1884 0.50 -0.6