Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1879

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1878: 10246 - K01875 SARS, serS seryl-tRNA synthetase, at 420852 to 422750 10246 mRNA_1879: 10247 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 423115 to 424156 10247 mRNA_1880: 10248 - KOG0254 Predicted transporter (major facilitator superfamily), at 424298 to 426105 10248

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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422,922 - -0.2
422,929 - 2.6
422,933 + 2.1
422,950 - 3.0
423,367 - 10247 mRNA_1879 0.24 -0.5
423,393 - 10247 mRNA_1879 0.27 -0.1
423,670 + 10247 mRNA_1879 0.53 -1.1
423,684 + 10247 mRNA_1879 0.55 -0.5
423,933 + 10247 mRNA_1879 0.79 2.5
423,935 - 10247 mRNA_1879 0.79 1.4
423,939 - 10247 mRNA_1879 0.79 0.7
423,981 + 10247 mRNA_1879 0.83 0.4
424,131 - 0.0
424,314 - 1.5
424,586 - 10248 mRNA_1880 0.16 3.1