Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1874

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1873: 10241 - BLAST Rab geranylgeranyltransferase [Mycena chlorophos], at 411554 to 414002 10241 mRNA_1874: 10242 - BLAST midasin [Pseudozyma hubeiensis SY62], at 414154 to 415207 10242 mRNA_1875: 10243 - Hypothetical Protein, at 415484 to 416261 10243

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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413,359 - 10241 mRNA_1873 0.74 4.3
413,364 - 10241 mRNA_1873 0.74 -0.1
413,474 + 10241 mRNA_1873 0.78 1.3
413,481 - 10241 mRNA_1873 0.79 -1.2
413,785 + -1.3
413,929 - 1.7
413,948 + 0.6
414,068 - -0.4
414,103 + 1.2
414,108 - 0.6
414,117 + 0.7
414,124 + 1.1
414,241 - 2.2
414,249 - 1.4
414,253 + 0.8
414,256 + 1.2
414,414 + 10242 mRNA_1874 0.25 0.4
414,524 + 10242 mRNA_1874 0.35 0.2
414,555 - 10242 mRNA_1874 0.38 -1.0
414,705 - 10242 mRNA_1874 0.52 -0.2
414,834 - 10242 mRNA_1874 0.65 -0.6
414,841 + 10242 mRNA_1874 0.65 -0.6
414,977 - 10242 mRNA_1874 0.78 -0.8
415,721 + 10243 mRNA_1875 0.30 1.7