Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1873

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1872: 10240 - K14566 UTP24, FCF1 U3 small nucleolar RNA-associated protein 24, at 410238 to 411340 10240 mRNA_1873: 10241 - BLAST Rab geranylgeranyltransferase [Mycena chlorophos], at 411554 to 414002 10241 mRNA_1874: 10242 - BLAST midasin [Pseudozyma hubeiensis SY62], at 414154 to 415207 10242

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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411,371 - 0.3
411,373 + 0.5
411,379 + -1.7
411,390 + 1.2
411,393 + 1.0
411,401 - 0.3
411,415 + -1.7
411,452 + -1.4
411,453 + -0.3
411,572 + 0.3
411,604 + 1.6
411,764 + 1.9
411,764 + -1.3
411,858 + 10241 mRNA_1873 0.12 0.2
411,898 + 10241 mRNA_1873 0.14 -0.1
412,423 + 10241 mRNA_1873 0.35 2.0
412,648 + 10241 mRNA_1873 0.45 2.8
412,884 + 10241 mRNA_1873 0.54 -1.7
413,045 + 10241 mRNA_1873 0.61 0.5
413,058 + 10241 mRNA_1873 0.61 -0.4
413,072 - 10241 mRNA_1873 0.62 -0.4
413,359 - 10241 mRNA_1873 0.74 4.3
413,364 - 10241 mRNA_1873 0.74 -0.1
413,474 + 10241 mRNA_1873 0.78 1.3
413,481 - 10241 mRNA_1873 0.79 -1.2
413,785 + -1.3
413,929 - 1.7
413,948 + 0.6
414,068 - -0.4
414,103 + 1.2
414,108 - 0.6
414,117 + 0.7
414,124 + 1.1
414,241 - 2.2
414,249 - 1.4
414,253 + 0.8
414,256 + 1.2
414,414 + 10242 mRNA_1874 0.25 0.4
414,524 + 10242 mRNA_1874 0.35 0.2
414,555 - 10242 mRNA_1874 0.38 -1.0
414,705 - 10242 mRNA_1874 0.52 -0.2
414,834 - 10242 mRNA_1874 0.65 -0.6
414,841 + 10242 mRNA_1874 0.65 -0.6
414,977 - 10242 mRNA_1874 0.78 -0.8