Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1857

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224 mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383950 to 386547 10225 mRNA_1858: 10226 - K19245 JLP1 sulfonate dioxygenase, at 387260 to 388608 10226

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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383,428 - 10224 mRNA_1856 0.82 1.7
383,454 - 10224 mRNA_1856 0.84 1.6
383,459 - 10224 mRNA_1856 0.85 2.9
383,753 - 0.3
383,946 - 0.4
384,191 + -0.0
384,504 - 10225 mRNA_1857 0.21 -0.4
384,513 + 10225 mRNA_1857 0.22 -0.4
385,193 - 10225 mRNA_1857 0.48 1.7
385,344 - 10225 mRNA_1857 0.54 0.1
385,504 + 10225 mRNA_1857 0.60 1.5
385,608 + 10225 mRNA_1857 0.64 -0.3
385,912 - 10225 mRNA_1857 0.76 0.3
386,076 - 10225 mRNA_1857 0.82 -0.8
386,196 - 10225 mRNA_1857 0.86 -1.7
386,197 + 10225 mRNA_1857 0.86 2.3
386,340 - 1.9
386,493 - 1.6
386,504 - 1.6
386,512 + 1.8
386,633 + -0.6
386,658 - 0.1
386,798 + 0.5
386,815 - 1.1
386,821 + -0.0
386,823 + 2.3
386,932 - -0.4
386,952 - -0.7
386,962 - 1.0
386,963 + 1.5
386,966 - 2.0
386,966 - 0.3
386,972 - -0.6
386,974 + 0.4
386,976 - 0.1
387,098 - 0.2
387,128 + -1.4
387,147 + -0.8
387,241 + -0.3
387,286 - -0.4
387,394 - 0.6
387,397 + 10226 mRNA_1858 0.10 -0.5
387,532 - 10226 mRNA_1858 0.20 0.2