Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1855

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1854: 10222 - Hypothetical Protein, at 378651 to 380549 10222 mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380959 to 382150 10223 mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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380,053 - 10222 mRNA_1854 0.74 1.1
380,373 - 2.1
380,387 + 3.3
380,398 - 1.2
380,402 - 1.3
380,415 - 1.0
380,575 - -0.1
380,576 + -0.0
380,685 - -0.3
380,703 + 3.2
380,720 - -0.4
380,720 - -0.0
380,723 + 2.2
380,731 + 1.2
380,826 + 2.7
380,841 + 0.2
380,882 + 0.1
380,986 - 1.2
380,992 - 0.5
380,994 + 0.7
381,140 - 10223 mRNA_1855 0.15 2.2
381,144 + 10223 mRNA_1855 0.16 -1.1
381,145 - 10223 mRNA_1855 0.16 0.7
381,165 + 10223 mRNA_1855 0.17 2.8
381,408 + 10223 mRNA_1855 0.38 -0.4
381,436 - 10223 mRNA_1855 0.40 1.8
381,703 + 10223 mRNA_1855 0.62 1.3
381,707 + 10223 mRNA_1855 0.63 2.1
381,710 - 10223 mRNA_1855 0.63 1.1
381,883 + 10223 mRNA_1855 0.78 2.2
381,909 + 10223 mRNA_1855 0.80 -0.5
382,332 + -0.4
382,440 - 3.7
382,465 - 0.3
382,478 + 10224 mRNA_1856 0.11 0.0
382,605 + 10224 mRNA_1856 0.20 -0.5