Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1847

Experiments: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357162 to 359735 10214 mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362950 to 364987 10216

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
359,459 + 10214 mRNA_1846 0.89 0.8
359,471 - 10214 mRNA_1846 0.90 -0.6
359,473 + 10214 mRNA_1846 0.90 0.9
359,492 + -0.0
359,503 + 0.5
359,595 - 1.2
359,598 + -0.4
359,606 + -0.6
359,609 - 1.8
359,624 + 1.4
359,731 - -0.2
359,759 - 1.0
359,776 + -0.2
359,781 - 1.8
359,786 + 1.2
359,788 + 0.8
359,902 + 0.9
359,902 - 0.6
359,909 + -0.8
359,912 + 1.1
359,915 + -0.8
359,954 + 1.1
359,961 - 0.7
360,001 + 1.5
360,003 - 0.5
360,003 + -0.1
360,022 - 0.1
360,032 + 2.0
360,047 + -0.5
360,051 + -0.8
360,057 - -0.3
360,060 + 0.7
360,070 - 2.5
360,071 + 0.2
360,073 + 0.3
360,077 + -0.4
360,087 + -0.3
360,093 - 0.4
360,093 + 0.1
360,105 + 0.5
360,105 + 1.0
360,115 - 2.4
360,132 + -1.0
360,135 - 0.2
360,140 - 0.4
360,147 + -0.1
360,148 - -1.0
360,148 - 0.4
360,148 - 0.1
360,149 + 1.0
360,150 - 0.2
360,151 + -1.0
360,151 + -0.6
360,156 + 1.1
360,156 + 1.5
360,157 + 1.0
360,160 - -0.1
360,160 + -0.0
360,161 - -0.6
360,161 + 0.5
360,161 - -0.1
360,165 + 0.7
360,168 + 2.0
360,171 + 0.7
360,175 + 0.1
360,175 + -0.2
360,177 + -1.8
360,177 + 2.4
360,181 - 2.7
360,181 - -1.2
360,186 - -0.5
360,187 + -0.5
360,192 - 0.3
360,199 - 0.0
360,201 + 0.6
360,203 - 1.6
360,203 + -0.3
360,203 - -0.1
360,204 - 1.3
360,204 + 0.6
360,204 + 1.3
360,205 - 0.0
360,213 - 3.7
360,224 - 0.6
360,232 - -0.4
360,233 + 0.4
360,237 + 2.6
360,241 + -0.7
360,241 + 1.9
360,242 + 0.1
360,242 - -0.7
360,243 - -1.0
360,244 - 1.1
360,244 - 0.3
360,246 + 2.3
360,246 + 0.9
360,246 + -1.2
360,249 + 0.9
360,249 - -0.3
360,251 + 1.6
360,251 + -0.0
360,252 + 0.1
360,254 - 0.3
360,256 + -0.8
360,260 + 0.1
360,260 - 0.1
360,263 + 0.2
360,264 - 0.5
360,265 + 1.0
360,267 - 0.6
360,268 + -1.9
360,268 + -1.2
360,268 + 0.5
360,268 + 1.0
360,269 + 1.9
360,269 - 0.0
360,272 - -1.7
360,274 - -0.3
360,276 - -0.5
360,277 - -0.3
360,280 - -0.6
360,285 - 0.1
360,290 + -1.4
360,304 + -0.3
360,417 - 1.7
360,431 - 1.2
360,442 + 0.2
360,558 + 10215 mRNA_1847 0.12 0.2
360,691 - 10215 mRNA_1847 0.19 0.8
360,875 - 10215 mRNA_1847 0.28 0.0
360,892 - 10215 mRNA_1847 0.29 1.3
361,162 - 10215 mRNA_1847 0.43 0.1
361,289 + 10215 mRNA_1847 0.49 1.9
361,905 - 10215 mRNA_1847 0.80 0.9
361,912 + 10215 mRNA_1847 0.80 3.2
361,933 + 10215 mRNA_1847 0.81 -1.0
362,009 - 10215 mRNA_1847 0.85 -0.6
362,329 + 0.3
362,352 - 0.0
362,382 - 1.8
362,404 - -0.7
362,488 - 1.8
362,489 - -0.6
362,509 - 0.7
362,516 + 0.6
362,518 - 0.9
362,519 - -1.9
362,527 + 1.1
362,538 - -0.3
362,541 + 2.1
362,545 + 0.2
362,545 + 0.3
362,555 + -0.1
362,557 + -0.0
362,559 + -1.0
362,560 - 0.6
362,564 - 2.7
362,567 - 1.3
362,571 - 1.2
362,571 + 0.4
362,584 - -0.0
362,589 + 0.9
362,605 - 1.7
362,628 - 1.2
362,639 - -0.4
362,640 + 1.1
362,641 + -0.4
362,643 + -0.3
362,644 + -0.9
362,647 - -1.2
362,676 - 0.7
362,676 + -0.6
362,689 - 0.5
362,692 + 0.6
362,693 + 0.7
362,698 - -0.4
362,698 - -0.5
362,702 - 0.3
362,708 + 0.4
362,717 - -1.1
362,717 + 0.1
362,721 - -0.8
362,726 - 1.0
362,731 - -0.5
362,732 + -1.3
362,735 - 0.3
362,750 + 0.3
362,751 + 1.0
362,752 + 0.1
362,753 + -0.2
362,753 + -0.1
362,758 - 0.2
362,764 - -0.1
362,766 - -2.3
362,775 + -1.1
362,775 - 0.2
362,776 + -0.1
362,778 + -0.8
362,789 + -0.4
362,797 - 1.1
362,801 + 1.5
362,803 + 1.1
362,812 + 1.2
362,813 + -0.7
362,911 + 1.3
362,912 - -0.0
362,945 - 2.6
362,949 - -0.0
363,058 + 0.3
363,086 - 1.1
363,093 + -1.4
363,097 - -0.4
363,230 - 10216 mRNA_1848 0.14 2.5
363,257 + 10216 mRNA_1848 0.15 -0.1