Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1843

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211 mRNA_1844: 10212 - K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 353890 to 355492 10212

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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346,774 + 10210 mRNA_1842 0.82 -0.1
346,782 - 10210 mRNA_1842 0.82 -0.0
346,910 - 10210 mRNA_1842 0.88 0.8
346,921 + 10210 mRNA_1842 0.88 -1.4
346,924 - 10210 mRNA_1842 0.88 0.6
347,075 + -0.4
347,187 - -0.1
347,214 + -1.5
347,335 + 0.4
347,346 - 0.9
347,361 - 0.5
347,363 - 0.1
347,365 + -0.3
347,371 - 3.3
347,401 - 0.7
347,515 + 3.6
347,525 + -0.6
347,529 - 2.4
347,676 - 0.9
347,794 - 1.1
347,806 + 1.8
347,832 + -0.0
347,836 + -0.5
347,949 - -0.2
347,955 + 0.3
348,222 + 10211 mRNA_1843 0.11 -0.2
348,268 - 10211 mRNA_1843 0.12 -0.1
348,360 - 10211 mRNA_1843 0.14 -1.0
348,398 + 10211 mRNA_1843 0.14 0.1
348,406 + 10211 mRNA_1843 0.14 0.9
348,686 + 10211 mRNA_1843 0.19 1.9
348,701 + 10211 mRNA_1843 0.19 1.7
349,262 + 10211 mRNA_1843 0.28 1.0
349,452 + 10211 mRNA_1843 0.31 -0.4
349,530 - 10211 mRNA_1843 0.33 2.2
349,549 + 10211 mRNA_1843 0.33 0.7
349,572 + 10211 mRNA_1843 0.33 0.2
349,588 + 10211 mRNA_1843 0.34 -1.7
349,712 - 10211 mRNA_1843 0.36 1.3
349,807 - 10211 mRNA_1843 0.37 0.2
350,158 + 10211 mRNA_1843 0.43 1.5
351,293 - 10211 mRNA_1843 0.61 1.0
352,105 + 10211 mRNA_1843 0.75 -1.0
352,402 - 10211 mRNA_1843 0.80 3.2
352,780 - 10211 mRNA_1843 0.86 -0.3
352,896 - 10211 mRNA_1843 0.88 0.6
352,923 - 10211 mRNA_1843 0.88 2.6
352,928 + 10211 mRNA_1843 0.88 -1.3
353,169 - -0.3
353,520 - -0.9
353,688 - 1.6
353,690 - 1.3
353,809 + 0.5
353,811 + -1.8
353,818 - 0.8
353,821 - -0.0
353,822 + 0.9
353,835 - 0.2
353,875 - -2.5
354,073 - 10212 mRNA_1844 0.11 1.7