Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1842

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1841: 10209 - KOG4476 Gluconate transport-inducing protein, at 342756 to 344236 10209 mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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344,164 - -0.3
344,262 - 0.6
344,331 - 0.2
344,560 - 1.1
344,567 + 0.7
344,583 - -0.5
344,590 - 2.9
344,610 - -0.7
344,643 - -1.5
344,653 + 0.2
344,691 + 0.1
344,693 - 0.9
344,704 + -0.2
344,704 - -1.3
344,727 + 0.1
344,748 + 2.5
344,863 - -0.6
345,015 + 1.4
345,034 - 1.1
345,303 + 10210 mRNA_1842 0.20 2.0
345,453 - 10210 mRNA_1842 0.27 -0.6
345,470 + 10210 mRNA_1842 0.27 -0.2
345,757 - 10210 mRNA_1842 0.39 1.0
345,773 + 10210 mRNA_1842 0.40 0.2
345,902 + 10210 mRNA_1842 0.46 -0.0
346,184 - 10210 mRNA_1842 0.57 0.7
346,774 + 10210 mRNA_1842 0.82 -0.1
346,782 - 10210 mRNA_1842 0.82 -0.0
346,910 - 10210 mRNA_1842 0.88 0.8
346,921 + 10210 mRNA_1842 0.88 -1.4
346,924 - 10210 mRNA_1842 0.88 0.6
347,075 + -0.4
347,187 - -0.1
347,214 + -1.5
347,335 + 0.4
347,346 - 0.9
347,361 - 0.5
347,363 - 0.1
347,365 + -0.3
347,371 - 3.3
347,401 - 0.7
347,515 + 3.6
347,525 + -0.6
347,529 - 2.4
347,676 - 0.9
347,794 - 1.1
347,806 + 1.8
347,832 + -0.0
347,836 + -0.5
347,949 - -0.2
347,955 + 0.3