Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1839

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336405 to 337627 10206 mRNA_1839: 10207 - Hypothetical Protein, at 337728 to 339625 10207 mRNA_1840: 10208 - Hypothetical Protein, at 340011 to 340722 10208

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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337,638 - -0.1
338,096 + 10207 mRNA_1839 0.19 0.7
338,214 + 10207 mRNA_1839 0.26 -0.7
338,532 + 10207 mRNA_1839 0.42 -1.6
338,609 + 10207 mRNA_1839 0.46 2.9
338,638 - 10207 mRNA_1839 0.48 -0.8
338,674 - 10207 mRNA_1839 0.50 -0.7
338,693 + 10207 mRNA_1839 0.51 -0.7
338,817 + 10207 mRNA_1839 0.57 2.0
338,853 - 10207 mRNA_1839 0.59 -1.1
338,946 - 10207 mRNA_1839 0.64 -0.1
338,954 + 10207 mRNA_1839 0.65 1.0
338,973 + 10207 mRNA_1839 0.66 3.1
339,113 - 10207 mRNA_1839 0.73 -1.3
339,387 - 10207 mRNA_1839 0.87 2.4
339,411 + 10207 mRNA_1839 0.89 -0.3
339,724 + 1.2
339,862 - 0.9
339,880 - 1.8
339,882 + 0.6
339,999 + -0.6
340,444 + 10208 mRNA_1840 0.61 -1.6
340,604 - 10208 mRNA_1840 0.83 -1.2