Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1819

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1818: 10186 - Hypothetical Protein, at 286917 to 287591 10186 mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187 mRNA_1820: 10188 - Hypothetical Protein, at 290979 to 291681 10188

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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286,887 + 0.8
287,167 + 10186 mRNA_1818 0.37 2.5
287,172 - 10186 mRNA_1818 0.38 -0.5
287,175 + 10186 mRNA_1818 0.38 -0.2
287,196 - 10186 mRNA_1818 0.41 -0.2
287,199 + 10186 mRNA_1818 0.42 1.6
287,311 - 10186 mRNA_1818 0.58 2.1
287,331 - 10186 mRNA_1818 0.61 1.2
287,335 - 10186 mRNA_1818 0.62 2.2
287,359 - 10186 mRNA_1818 0.65 -0.8
287,382 + 10186 mRNA_1818 0.69 -1.3
287,395 + 10186 mRNA_1818 0.71 2.6
287,400 - 10186 mRNA_1818 0.72 -0.5
287,403 + 10186 mRNA_1818 0.72 0.4
287,406 + 10186 mRNA_1818 0.72 2.9
287,489 + 10186 mRNA_1818 0.85 1.2
287,533 + -0.5
287,645 + 0.6
287,654 - 0.4
287,656 + 0.4
287,660 - -0.5
287,712 - 0.9
287,721 + -0.9
287,778 - -0.5
287,778 + 1.4
287,778 + 0.1
287,795 + 2.3
287,803 + 0.8
287,853 - 3.0
287,967 + 2.5
287,995 - 0.6
288,007 - -0.5
288,010 + 0.3
288,014 + 0.9
288,017 - 0.5
288,018 + 0.9
288,019 + -1.1
288,037 + 0.8
288,151 + 10187 mRNA_1819 0.11 -0.6
288,164 + 10187 mRNA_1819 0.11 -0.6
288,171 + 10187 mRNA_1819 0.11 -0.2
288,472 + 10187 mRNA_1819 0.23 0.0
288,479 + 10187 mRNA_1819 0.23 0.6
288,497 + 10187 mRNA_1819 0.24 -0.2
288,897 + 10187 mRNA_1819 0.40 2.1
288,900 - 10187 mRNA_1819 0.40 -1.1
289,187 + 10187 mRNA_1819 0.51 -0.3
289,606 + 10187 mRNA_1819 0.67 -1.9
289,680 + 10187 mRNA_1819 0.70 0.4
289,783 - 10187 mRNA_1819 0.74 -0.4
289,963 + 10187 mRNA_1819 0.81 1.7
290,007 - 10187 mRNA_1819 0.83 -0.1
290,340 + 0.5
290,518 - -0.9
290,661 - -2.1
290,665 - -2.0
290,806 + 0.5
290,952 - 0.6
291,258 - 10188 mRNA_1820 0.40 -0.5
291,269 - 10188 mRNA_1820 0.41 -0.1
291,271 - 10188 mRNA_1820 0.42 0.3
291,275 - 10188 mRNA_1820 0.42 0.3
291,276 - 10188 mRNA_1820 0.42 -0.8
291,278 + 10188 mRNA_1820 0.43 0.8
291,281 - 10188 mRNA_1820 0.43 3.2
291,283 + 10188 mRNA_1820 0.43 -0.6
291,283 - 10188 mRNA_1820 0.43 0.5
291,289 + 10188 mRNA_1820 0.44 -0.8
291,289 + 10188 mRNA_1820 0.44 -1.0
291,290 - 10188 mRNA_1820 0.44 0.5
291,297 + 10188 mRNA_1820 0.45 1.8
291,299 + 10188 mRNA_1820 0.46 1.3
291,300 - 10188 mRNA_1820 0.46 -0.2
291,317 - 10188 mRNA_1820 0.48 -0.3
291,349 + 10188 mRNA_1820 0.53 -0.9
291,352 - 10188 mRNA_1820 0.53 -0.2
291,358 - 10188 mRNA_1820 0.54 0.5
291,370 + 10188 mRNA_1820 0.56 -0.3
291,371 + 10188 mRNA_1820 0.56 0.9
291,416 - 10188 mRNA_1820 0.62 -0.1
291,416 + 10188 mRNA_1820 0.62 1.6
291,437 + 10188 mRNA_1820 0.65 1.7
291,438 + 10188 mRNA_1820 0.65 0.2