Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1816

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1815: 10183 - K20777 EXD2 exonuclease 3'-5' domain-containing protein 2, at 280165 to 281761 10183 mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282501 to 284889 10184 mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285247 to 286558 10185

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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281,657 - -0.3
281,659 - 0.9
281,661 - -0.6
281,682 + 1.0
281,748 + 0.3
281,762 - 0.6
281,784 - 2.9
281,785 + 2.2
281,803 - -1.2
281,808 - -2.4
281,810 + -0.8
281,826 - 0.3
281,827 + -0.3
281,859 - 2.7
281,896 + -1.9
281,935 + 1.5
281,950 + 0.2
281,978 - 0.9
281,981 + 0.4
282,003 - 2.5
282,004 + 0.4
282,008 - 0.4
282,015 + -0.5
282,019 - 1.8
282,025 + -0.3
282,040 + -0.7
282,076 + 1.7
282,184 + 0.4
282,195 - 1.4
282,209 + 0.3
282,212 + 2.3
282,215 - 0.1
282,240 + -0.1
282,242 - 0.4
282,280 + 0.7
282,282 + 2.2
282,287 + 0.2
282,306 - 1.5
282,310 + -0.0
282,352 - -0.3
282,352 + -0.1
282,355 - 0.5
282,360 + -0.2
282,361 + 2.5
282,361 - 2.2
282,362 - 0.8
282,364 - 1.1
282,364 + 1.2
282,364 - -0.3
282,375 - 0.7
282,381 + 1.2
282,382 + -0.6
282,387 - 0.5
282,395 + 1.0
282,397 + 0.8
282,401 - 1.1
282,418 - -0.1
282,439 - -0.7
282,522 + -0.3
282,532 + 1.3
282,569 + 1.9
282,579 + -0.8
282,678 - 0.4
282,887 - 10184 mRNA_1816 0.16 -0.8
283,251 - 10184 mRNA_1816 0.31 -0.3
283,858 - 10184 mRNA_1816 0.57 0.2
283,883 - 10184 mRNA_1816 0.58 -0.9
284,062 - 10184 mRNA_1816 0.65 0.9
284,484 - 10184 mRNA_1816 0.83 -2.4
284,620 + 10184 mRNA_1816 0.89 0.6
284,916 - -0.8
284,925 + -1.1
285,737 + 10185 mRNA_1817 0.37 0.4