Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1812

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261573 to 264889 10179 mRNA_1812: 10180 - Hypothetical Protein, at 265152 to 268202 10180 mRNA_1813: 10181 - K04352 RASA1, RASGAP Ras GTPase-activating protein 1, at 269173 to 274604 10181

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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264,832 - 0.1
264,878 + -0.3
265,020 - 0.4
265,146 + 0.4
265,865 - 10180 mRNA_1812 0.23 0.1
265,872 + 10180 mRNA_1812 0.24 -2.7
266,040 - 10180 mRNA_1812 0.29 0.8
266,043 + 10180 mRNA_1812 0.29 -0.1
266,632 - 10180 mRNA_1812 0.49 0.6
266,753 - 10180 mRNA_1812 0.52 -0.3
267,262 - 10180 mRNA_1812 0.69 0.8
267,670 - 10180 mRNA_1812 0.83 -0.5
267,671 + 10180 mRNA_1812 0.83 0.3
267,819 - 10180 mRNA_1812 0.87 0.1
267,996 - 0.2
268,120 + -2.6
268,134 - 0.0
268,140 + -1.0
268,225 - 4.4
268,262 - 0.1
268,263 - -0.3
268,263 - 0.2
268,263 - -0.4
268,272 - 0.2
268,304 + -0.8
268,341 - 2.1
268,343 + -0.2
268,353 - 1.0
268,358 - 0.6
268,359 - 0.3
268,359 + 0.4
268,384 - 0.2
268,388 + 0.8
268,389 - 0.5
268,391 + 1.0
268,391 - 0.9
268,393 - 1.5
268,397 - 2.7
268,398 - 1.2
268,413 + 1.4
268,419 + 1.5
268,425 - 0.1
268,434 + 0.6
268,439 - 1.9
268,441 - -0.7
268,447 - 0.1
268,447 - -0.7
268,449 - 2.8
268,454 - 0.1
268,469 - 0.0
268,471 + -1.3
268,482 - 0.7
268,484 - 0.1
268,514 + 0.6
268,540 - 1.0
268,540 + -0.1
268,553 - 1.5
268,572 + -1.4
268,575 + 1.1
268,577 - -0.0
268,577 + 1.6
268,656 + -2.4
268,680 + -3.2
268,682 - 2.9
268,690 - 0.2
268,700 + 1.4
268,718 - 1.0
268,737 - -0.1
268,831 - 0.3
268,867 - -1.5
268,888 - -0.2
268,988 - 0.4
268,991 + 0.9
269,002 - 0.6
269,005 + -0.7
269,005 + -0.6
269,026 + 1.4
269,135 - 1.9
269,141 + -1.2