Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1811

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260255 to 261213 10178 mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261573 to 264889 10179 mRNA_1812: 10180 - Hypothetical Protein, at 265152 to 268202 10180

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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260,981 + 10178 mRNA_1810 0.76 -0.2
260,996 - 10178 mRNA_1810 0.77 -0.1
260,999 + 10178 mRNA_1810 0.78 -0.6
261,007 + 10178 mRNA_1810 0.78 0.4
261,013 - 10178 mRNA_1810 0.79 0.1
261,015 - 10178 mRNA_1810 0.79 1.3
261,156 - 1.8
261,169 - -0.3
261,174 - -0.7
261,185 - 0.9
261,299 - 0.2
261,302 + 0.5
261,314 + -0.2
261,348 - 1.7
261,356 + 4.1
261,363 - 1.0
261,364 - 0.4
261,481 - 1.5
261,648 - 1.9
261,654 - -0.4
263,096 - 10179 mRNA_1811 0.46 0.7
264,832 - 0.1
264,878 + -0.3
265,020 - 0.4
265,146 + 0.4
265,865 - 10180 mRNA_1812 0.23 0.1
265,872 + 10180 mRNA_1812 0.24 -2.7