Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1806

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1805: 10173 - K00616 E2.2.1.2, talA, talB transaldolase, at 244188 to 245888 10173 mRNA_1806: 10174 - BLAST related to C2H2 zinc finger protein [Ustilago hordei], at 246478 to 247533 10174

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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245,950 - 2.2
246,034 + 2.1
246,063 - -0.6
246,068 - 0.3
246,069 + 0.2
246,092 + 3.5
246,094 + 0.4
246,094 + 1.0
246,097 - 2.4
246,098 + -0.5
246,101 - -0.1
246,103 + 0.5
246,110 + 0.1
246,228 + -0.5
246,379 - 0.1
246,396 + 1.1
246,522 - 0.1
246,644 - 10174 mRNA_1806 0.16 1.3
247,013 - 10174 mRNA_1806 0.51 -0.7
247,151 - 10174 mRNA_1806 0.64 -0.2
247,276 + 10174 mRNA_1806 0.76 1.0
247,426 + 10174 mRNA_1806 0.90 0.3
247,552 - 0.7
247,891 - -0.3
248,000 + -2.1
248,260 + 0.3
248,499 - -0.8