Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1799

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225398 to 226777 10166 mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226927 to 229515 10167 mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229665 to 231047 10168

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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225,955 + 10166 mRNA_1798 0.40 0.4
226,375 + 10166 mRNA_1798 0.71 -0.3
226,382 + 10166 mRNA_1798 0.71 -0.2
226,465 + 10166 mRNA_1798 0.77 -0.1
227,104 - 1.6
227,305 + 10167 mRNA_1799 0.15 -0.2
227,717 + 10167 mRNA_1799 0.31 2.4
228,134 + 10167 mRNA_1799 0.47 0.9
228,137 - 10167 mRNA_1799 0.47 0.2
228,276 - 10167 mRNA_1799 0.52 -0.1
228,419 - 10167 mRNA_1799 0.58 4.1
228,707 + 10167 mRNA_1799 0.69 -0.5
228,859 - 10167 mRNA_1799 0.75 1.3
228,970 - 10167 mRNA_1799 0.79 -0.3
229,001 + 10167 mRNA_1799 0.80 -0.7
229,128 - 10167 mRNA_1799 0.85 -0.0
229,129 + 10167 mRNA_1799 0.85 0.3
229,129 - 10167 mRNA_1799 0.85 -0.3
229,148 + 10167 mRNA_1799 0.86 0.7
229,265 - 2.4
229,415 + 0.7
229,417 + 1.8
229,420 + -0.4
229,438 + 0.4
229,443 + -1.1
229,467 - -0.1
229,467 - 1.2
229,470 + 0.0
229,473 - 0.3
229,475 - 2.0
229,476 - 0.2
229,476 - 2.0
229,481 - 0.2
229,481 + 3.1
229,482 - 0.1
229,487 + -0.5
229,488 + 0.8
229,492 + 2.0
229,492 + 0.0
229,505 + 0.9
229,511 + 0.0
229,613 - 1.8
229,618 + 1.3
229,626 + 2.2
229,627 - -0.5
229,628 + 0.0
229,628 - 0.2
229,635 + -1.9
229,662 + -0.4
229,667 - -0.3
229,786 - -0.1
229,786 + -0.7
229,910 - 10168 mRNA_1800 0.18 1.6
230,079 - 10168 mRNA_1800 0.30 -0.1
230,084 + 10168 mRNA_1800 0.30 -0.5
230,215 + 10168 mRNA_1800 0.40 -0.8
230,335 + 10168 mRNA_1800 0.48 0.6
230,398 - 10168 mRNA_1800 0.53 -0.5
230,489 + 10168 mRNA_1800 0.60 0.2
230,489 + 10168 mRNA_1800 0.60 0.6