Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1798

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1797: 10165 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 222381 to 224884 10165 mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225398 to 226777 10166 mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226927 to 229515 10167

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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224,528 + 10165 mRNA_1797 0.86 0.2
224,706 - -2.5
224,972 - 0.6
225,147 - 3.7
225,292 + -0.1
225,304 + 1.6
225,313 + -0.7
225,317 + -0.0
225,326 - 0.2
225,327 + 0.3
225,330 - -0.1
225,332 + 0.6
225,333 - 1.6
225,475 + 3.2
225,486 - -0.1
225,600 - 10166 mRNA_1798 0.15 -1.5
225,629 + 10166 mRNA_1798 0.17 -1.1
225,915 + 10166 mRNA_1798 0.37 0.1
225,955 + 10166 mRNA_1798 0.40 0.4
226,375 + 10166 mRNA_1798 0.71 -0.3
226,382 + 10166 mRNA_1798 0.71 -0.2
226,465 + 10166 mRNA_1798 0.77 -0.1
227,104 - 1.6
227,305 + 10167 mRNA_1799 0.15 -0.2
227,717 + 10167 mRNA_1799 0.31 2.4