Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1790

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1789: 10157 - K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A, at 210969 to 211922 10157 mRNA_1790: 10158 - Hypothetical Protein, at 212184 to 213881 10158 mRNA_1791: 10159 - Hypothetical Protein, at 214130 to 214450 10159 mRNA_1792: 10160 - Hypothetical Protein, at 214724 to 215217 10160

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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211,962 + -0.6
211,964 + 1.3
211,967 - 0.4
211,968 + -2.0
211,979 - 0.1
212,059 + 1.6
212,097 + 3.8
212,441 + 10158 mRNA_1790 0.15 3.6
212,707 - 10158 mRNA_1790 0.31 -0.9
212,988 - 10158 mRNA_1790 0.47 -0.4
212,988 + 10158 mRNA_1790 0.47 1.7
213,004 - 10158 mRNA_1790 0.48 0.1
213,007 - 10158 mRNA_1790 0.48 0.1
213,123 - 10158 mRNA_1790 0.55 0.7
213,168 - 10158 mRNA_1790 0.58 0.4
213,239 - 10158 mRNA_1790 0.62 1.1
213,442 + 10158 mRNA_1790 0.74 0.5
213,564 + 10158 mRNA_1790 0.81 1.7
213,706 - 10158 mRNA_1790 0.90 1.4
214,016 - 0.1
214,019 + -0.6
214,162 - 10159 mRNA_1791 0.10 1.0
214,184 + 10159 mRNA_1791 0.17 1.9
214,190 - 10159 mRNA_1791 0.19 -0.2
214,319 - 10159 mRNA_1791 0.59 -0.5
214,323 - 10159 mRNA_1791 0.60 -1.0
214,328 - 10159 mRNA_1791 0.62 -0.9
214,335 - 10159 mRNA_1791 0.64 1.4
214,336 - 10159 mRNA_1791 0.64 0.6
214,336 - 10159 mRNA_1791 0.64 -0.0
214,337 + 10159 mRNA_1791 0.64 -0.6
214,347 + 10159 mRNA_1791 0.68 1.8
214,349 - 10159 mRNA_1791 0.68 -1.3
214,357 + 10159 mRNA_1791 0.71 0.4
214,367 + 10159 mRNA_1791 0.74 -0.0
214,384 - 10159 mRNA_1791 0.79 -1.5
214,461 - -0.5
214,467 + 0.8
214,473 - 0.3
214,484 - -0.1
214,485 + -0.0
214,486 + 0.2
214,520 - -1.1
214,549 - 0.8
214,628 - -0.0
214,772 - -0.1
214,786 - 10160 mRNA_1792 0.13 0.2