Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1778

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1777: 10145 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 181688 to 183339 10145 mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183899 to 184487 10146 mRNA_1779: 10147 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 185059 to 187419 10147

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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182,967 + 10145 mRNA_1777 0.77 0.2
182,980 + 10145 mRNA_1777 0.78 1.6
182,998 + 10145 mRNA_1777 0.79 1.9
183,072 - 10145 mRNA_1777 0.84 1.1
183,082 + 10145 mRNA_1777 0.84 1.3
183,119 - 10145 mRNA_1777 0.87 0.4
183,358 - 0.2
183,389 - 0.1
183,406 + 0.0
183,518 - 2.1
183,576 + 1.3
183,582 + -1.0
183,690 + 1.3
183,690 + 3.3
183,703 + 0.3
183,704 - -0.1
183,807 + 0.1
183,961 + 10146 mRNA_1778 0.11 0.8
183,977 + 10146 mRNA_1778 0.13 -0.5
184,417 - 10146 mRNA_1778 0.88 0.4
184,427 - 10146 mRNA_1778 0.90 0.6
184,433 + -1.3
184,565 + -0.3
184,845 - 1.8
184,853 + 3.3
184,856 - -0.4
184,881 + 1.6
184,882 - 1.2
184,883 + 0.1
184,891 + -0.0
184,894 - 1.4
184,898 - 0.6
184,899 - -1.8
184,933 - 0.2
184,954 + -2.8
185,068 - 0.7
185,079 - 0.0
185,245 + 1.3
185,257 + -0.1
185,259 - -1.3
185,402 + 10147 mRNA_1779 0.15 -0.9
185,452 - 10147 mRNA_1779 0.17 0.8
185,466 + 10147 mRNA_1779 0.17 0.1