Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1775

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1774: 10142 - Hypothetical Protein, at 173181 to 173906 10142 mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174192 to 176320 10143 mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177304 to 181065 10144

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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173,224 + 0.8
173,309 - 10142 mRNA_1774 0.18 0.6
173,366 + 10142 mRNA_1774 0.25 0.3
173,398 + 10142 mRNA_1774 0.30 1.5
173,504 + 10142 mRNA_1774 0.44 0.1
173,512 + 10142 mRNA_1774 0.46 2.1
173,596 + 10142 mRNA_1774 0.57 2.0
173,634 + 10142 mRNA_1774 0.62 0.1
173,650 + 10142 mRNA_1774 0.65 1.0
173,899 - 0.8
173,986 + 0.5
174,073 - -0.2
174,104 - 0.7
174,126 + 1.8
174,238 + 2.2
174,377 + -1.0
174,562 - 10143 mRNA_1775 0.17 3.1
174,565 + 10143 mRNA_1775 0.18 0.1
175,104 - 10143 mRNA_1775 0.43 -0.1
175,249 - 10143 mRNA_1775 0.50 -0.1
175,290 - 10143 mRNA_1775 0.52 0.6
175,297 + 10143 mRNA_1775 0.52 0.5
175,464 - 10143 mRNA_1775 0.60 2.2
175,541 - 10143 mRNA_1775 0.63 0.5
175,853 - 10143 mRNA_1775 0.78 -0.0
175,873 + 10143 mRNA_1775 0.79 0.8
175,963 - 10143 mRNA_1775 0.83 1.0
175,969 + 10143 mRNA_1775 0.83 1.1
176,010 - 10143 mRNA_1775 0.85 1.0
176,089 - 10143 mRNA_1775 0.89 -0.3
176,151 + 0.3
176,265 + 2.6
176,295 - 0.3
176,309 - -0.2
176,401 - -0.0
176,432 + 3.8
176,432 - 1.0
176,441 - 1.5
176,442 + 0.6
176,459 + 1.1
176,471 - -0.5
176,473 - 0.7
176,499 + 2.5
176,515 + 2.0
176,516 + 2.1
176,517 - 1.0
176,527 + 0.4
176,572 + 0.7
176,575 - 1.9
176,680 + 3.2
176,723 - 0.8
176,749 - 1.8
176,889 + 1.0
177,019 - 0.4
177,025 - -0.5
177,038 + 0.5
177,050 + 0.6
177,064 - -0.9
177,200 - -1.3
177,201 + 0.8