Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1773

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1772: 10140 - K01480 speB agmatinase, at 169490 to 170600 10140 mRNA_1773: 10141 - Hypothetical Protein, at 171350 to 172928 10141 mRNA_1774: 10142 - Hypothetical Protein, at 173181 to 173906 10142

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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170,357 - 10140 mRNA_1772 0.78 -1.4
170,361 - 10140 mRNA_1772 0.78 -2.1
170,521 - 0.1
170,664 - -1.0
170,686 + 2.5
170,820 + 1.4
170,824 + 0.0
170,827 - 1.5
170,837 - 0.2
170,847 - 0.5
170,971 - 1.7
171,115 + -0.1
171,231 - -0.5
171,239 + -1.0
171,240 - 2.4
171,280 + 0.3
171,414 - 0.3
171,608 - 10141 mRNA_1773 0.16 1.7
171,609 + 10141 mRNA_1773 0.16 0.5
171,612 - 10141 mRNA_1773 0.17 -0.2
171,853 + 10141 mRNA_1773 0.32 1.2
171,884 + 10141 mRNA_1773 0.34 0.7
172,015 + 10141 mRNA_1773 0.42 -0.0
172,155 + 10141 mRNA_1773 0.51 0.4
172,161 + 10141 mRNA_1773 0.51 -0.2
172,295 + 10141 mRNA_1773 0.60 0.5
172,304 - 10141 mRNA_1773 0.60 0.7
172,430 + 10141 mRNA_1773 0.68 0.8
172,798 + 1.1
172,878 - -0.4
172,916 - -0.9
172,933 + 0.9
173,158 - 0.1
173,224 + 0.8
173,309 - 10142 mRNA_1774 0.18 0.6
173,366 + 10142 mRNA_1774 0.25 0.3
173,398 + 10142 mRNA_1774 0.30 1.5
173,504 + 10142 mRNA_1774 0.44 0.1
173,512 + 10142 mRNA_1774 0.46 2.1
173,596 + 10142 mRNA_1774 0.57 2.0
173,634 + 10142 mRNA_1774 0.62 0.1
173,650 + 10142 mRNA_1774 0.65 1.0
173,899 - 0.8