Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1772

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1771: 10139 - K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155, at 163525 to 168544 10139 mRNA_1772: 10140 - K01480 speB agmatinase, at 169490 to 170600 10140 mRNA_1773: 10141 - Hypothetical Protein, at 171350 to 172928 10141

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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168,629 - 0.3
168,765 - 1.1
168,830 - 0.3
169,061 - -0.7
169,061 - 0.6
169,067 + -0.2
169,067 + -0.2
169,100 - -0.2
169,374 - -1.6
169,457 - 0.2
169,636 - 10140 mRNA_1772 0.13 0.9
169,931 - 10140 mRNA_1772 0.40 1.7
169,968 + 10140 mRNA_1772 0.43 -0.1
170,010 - 10140 mRNA_1772 0.47 1.1
170,066 + 10140 mRNA_1772 0.52 0.2
170,357 - 10140 mRNA_1772 0.78 -1.4
170,361 - 10140 mRNA_1772 0.78 -2.1
170,521 - 0.1
170,664 - -1.0
170,686 + 2.5
170,820 + 1.4
170,824 + 0.0
170,827 - 1.5
170,837 - 0.2
170,847 - 0.5
170,971 - 1.7
171,115 + -0.1
171,231 - -0.5
171,239 + -1.0
171,240 - 2.4
171,280 + 0.3
171,414 - 0.3