Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1769

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156346 to 158351 10136 mRNA_1769: 10137 - Interpro F-box-like 0, at 159108 to 161176 10137 mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161532 to 163380 10138

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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158,117 + 10136 mRNA_1768 0.88 0.6
158,121 - 10136 mRNA_1768 0.88 -0.6
158,230 - 1.6
158,550 + 0.3
158,554 + -0.7
158,571 + 3.0
158,585 + 1.4
158,671 + -0.2
158,704 - 0.2
158,711 - -0.6
158,724 - 0.9
158,736 - -0.0
158,738 + 1.2
158,741 + -0.6
158,758 + 0.4
158,834 - 1.7
158,845 - 0.5
158,856 + 0.6
158,859 - -0.5
158,867 - 0.4
158,867 + 0.1
158,875 + 1.1
158,879 - 0.2
158,879 + 1.9
158,900 + 1.3
158,901 - 0.3
158,914 + -0.5
158,915 - 0.9
158,976 - -1.8
158,981 + 1.0
158,982 - -1.2
158,987 + -0.7
158,988 - -0.1
158,992 - 1.1
158,995 + 0.9
158,999 + -0.5
159,001 - 0.2
159,010 - 1.3
159,011 + 0.2
159,017 + 0.8
159,022 + 0.6
159,036 + -0.7
159,036 + 0.5
159,042 + 0.4
159,055 + 0.7
159,183 - -1.0
159,225 + -0.8
159,329 - 10137 mRNA_1769 0.11 -0.0
159,339 - 10137 mRNA_1769 0.11 -3.2
159,348 + 10137 mRNA_1769 0.12 0.3
159,449 - 10137 mRNA_1769 0.16 0.5
159,456 + 10137 mRNA_1769 0.17 -0.1
159,509 - 10137 mRNA_1769 0.19 -1.2
159,511 + 10137 mRNA_1769 0.19 0.2
159,516 - 10137 mRNA_1769 0.20 0.2
159,528 + 10137 mRNA_1769 0.20 0.4
159,544 + 10137 mRNA_1769 0.21 2.9
159,572 + 10137 mRNA_1769 0.22 1.7
159,589 - 10137 mRNA_1769 0.23 0.1
159,630 - 10137 mRNA_1769 0.25 2.7
159,646 + 10137 mRNA_1769 0.26 -0.6
159,660 - 10137 mRNA_1769 0.27 0.1
159,660 - 10137 mRNA_1769 0.27 0.1
159,715 - 10137 mRNA_1769 0.29 0.4
159,720 + 10137 mRNA_1769 0.30 1.1
159,735 - 10137 mRNA_1769 0.30 1.8
159,754 + 10137 mRNA_1769 0.31 0.5
159,927 + 10137 mRNA_1769 0.40 -0.0
159,927 + 10137 mRNA_1769 0.40 -0.2
160,143 + 10137 mRNA_1769 0.50 0.9
160,204 + 10137 mRNA_1769 0.53 0.1
160,209 + 10137 mRNA_1769 0.53 0.3
160,219 + 10137 mRNA_1769 0.54 -0.0
160,222 - 10137 mRNA_1769 0.54 0.1
160,548 - 10137 mRNA_1769 0.70 0.6
160,594 - 10137 mRNA_1769 0.72 -1.6
160,813 - 10137 mRNA_1769 0.82 1.1
160,821 + 10137 mRNA_1769 0.83 0.7
161,141 - 0.4