Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1768

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154773 to 156142 10135 mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156346 to 158351 10136 mRNA_1769: 10137 - Interpro F-box-like 0, at 159108 to 161176 10137

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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155,889 - 10135 mRNA_1767 0.81 0.6
155,896 - 10135 mRNA_1767 0.82 2.3
155,922 + 10135 mRNA_1767 0.84 -1.5
155,995 - 10135 mRNA_1767 0.89 -2.5
155,998 - 10135 mRNA_1767 0.89 0.8
156,003 + 10135 mRNA_1767 0.90 -1.4
156,026 + -1.4
156,175 + -0.2
156,185 - -0.1
156,188 + -1.1
156,221 - 0.6
156,323 - 0.3
156,342 + 0.7
156,385 - 1.0
156,471 - 0.0
156,553 - 10136 mRNA_1768 0.10 0.3
156,564 + 10136 mRNA_1768 0.11 -0.5
156,594 - 10136 mRNA_1768 0.12 1.2
156,611 + 10136 mRNA_1768 0.13 2.3
156,802 + 10136 mRNA_1768 0.23 1.9
157,183 - 10136 mRNA_1768 0.42 -0.9
157,228 + 10136 mRNA_1768 0.44 1.1
157,331 + 10136 mRNA_1768 0.49 -1.2
157,527 - 10136 mRNA_1768 0.59 0.5
157,642 - 10136 mRNA_1768 0.65 -2.2
157,808 - 10136 mRNA_1768 0.73 -1.5
157,837 + 10136 mRNA_1768 0.74 -0.6
157,992 + 10136 mRNA_1768 0.82 -1.0
158,107 - 10136 mRNA_1768 0.88 -0.8
158,117 + 10136 mRNA_1768 0.88 0.6
158,121 - 10136 mRNA_1768 0.88 -0.6
158,230 - 1.6
158,550 + 0.3
158,554 + -0.7
158,571 + 3.0
158,585 + 1.4
158,671 + -0.2
158,704 - 0.2
158,711 - -0.6
158,724 - 0.9
158,736 - -0.0
158,738 + 1.2
158,741 + -0.6
158,758 + 0.4
158,834 - 1.7
158,845 - 0.5
158,856 + 0.6
158,859 - -0.5
158,867 - 0.4
158,867 + 0.1
158,875 + 1.1
158,879 - 0.2
158,879 + 1.9
158,900 + 1.3
158,901 - 0.3
158,914 + -0.5
158,915 - 0.9
158,976 - -1.8
158,981 + 1.0
158,982 - -1.2
158,987 + -0.7
158,988 - -0.1
158,992 - 1.1
158,995 + 0.9
158,999 + -0.5
159,001 - 0.2
159,010 - 1.3
159,011 + 0.2
159,017 + 0.8
159,022 + 0.6
159,036 + -0.7
159,036 + 0.5
159,042 + 0.4
159,055 + 0.7
159,183 - -1.0
159,225 + -0.8
159,329 - 10137 mRNA_1769 0.11 -0.0
159,339 - 10137 mRNA_1769 0.11 -3.2
159,348 + 10137 mRNA_1769 0.12 0.3