Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1760

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1759: 10127 - K13345 PEX12, PAF3 peroxin-12, at 132751 to 134282 10127 mRNA_1760: 10128 - KOG0940 Ubiquitin protein ligase RSP5/NEDD4, at 134712 to 138303 10128

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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134,295 - 0.9
134,307 + 1.0
134,324 + 0.8
134,613 - 2.3
134,614 + -0.7
135,502 - 10128 mRNA_1760 0.22 -1.8
135,595 + 10128 mRNA_1760 0.25 2.4
136,053 + 10128 mRNA_1760 0.37 0.7
136,230 - 10128 mRNA_1760 0.42 0.0
136,319 - 10128 mRNA_1760 0.45 0.4
136,410 - 10128 mRNA_1760 0.47 1.8
137,315 + 10128 mRNA_1760 0.72 3.2
137,483 - 10128 mRNA_1760 0.77 0.4
137,671 + 10128 mRNA_1760 0.82 0.5
137,926 - 10128 mRNA_1760 0.89 -1.2
138,063 - -1.2
138,069 - 3.3
138,073 - -0.4
138,457 - 0.3
138,460 - 2.1
138,464 + 1.6
138,614 + 0.1
138,638 + 1.7
138,653 - -1.3
138,675 + 0.8
138,678 + -2.1
138,716 - -0.1
138,726 - 0.1
138,860 + 0.6
138,875 - -0.7
138,886 + -0.0
139,013 - 0.7
139,034 + -0.3
139,059 - -0.1
139,078 - 1.5
139,079 + -1.7
139,081 + -0.4
139,094 - 0.3
139,133 - 1.8
139,143 + 1.8
139,222 + -0.1
139,225 - -0.4
139,233 - 0.6
139,236 + -1.0
139,237 + -2.2
139,252 + 0.3
139,272 + -1.6
139,287 - 0.0
139,292 - 0.3