Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1757

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1756: 10124 - KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A, at 124866 to 126194 10124 mRNA_1757: 10125 - KOG1426 FOG RCC1 domain, at 126348 to 129051 10125 mRNA_1758: 10126 - KOG2998 Uncharacterized conserved protein, at 129758 to 131068 10126

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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125,373 - 10124 mRNA_1756 0.38 2.8
125,397 - 10124 mRNA_1756 0.40 0.5
125,429 - 10124 mRNA_1756 0.42 -0.8
125,539 - 10124 mRNA_1756 0.51 2.4
125,562 - 10124 mRNA_1756 0.52 -0.2
125,567 + 10124 mRNA_1756 0.53 -2.1
125,827 + 10124 mRNA_1756 0.72 -0.2
125,889 + 10124 mRNA_1756 0.77 -0.2
125,943 + 10124 mRNA_1756 0.81 -0.2
125,948 + 10124 mRNA_1756 0.81 1.4
126,167 + 0.5
126,333 - 0.2
126,418 - -0.2
126,429 - -0.5
126,434 + -1.6
126,593 - -1.1
126,603 - 0.1
126,757 + 10125 mRNA_1757 0.15 0.9
126,880 - 10125 mRNA_1757 0.20 0.6
126,985 - 10125 mRNA_1757 0.24 0.6
127,023 - 10125 mRNA_1757 0.25 0.6
127,046 - 10125 mRNA_1757 0.26 1.4
127,146 - 10125 mRNA_1757 0.30 0.1
127,237 + 10125 mRNA_1757 0.33 -0.9
127,444 + 10125 mRNA_1757 0.41 0.9
127,596 + 10125 mRNA_1757 0.46 0.5
128,211 + 10125 mRNA_1757 0.69 0.5
128,521 - 10125 mRNA_1757 0.80 0.3
128,899 + 2.4
129,035 + -0.7
129,063 + 1.6
129,210 + 1.0
129,650 - -0.6
129,654 - 1.1
129,675 + -0.4
129,805 + -0.3