Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1756

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1755: 10123 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 123629 to 124708 10123 mRNA_1756: 10124 - KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A, at 124866 to 126194 10124 mRNA_1757: 10125 - KOG1426 FOG RCC1 domain, at 126348 to 129051 10125

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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123,924 + 10123 mRNA_1755 0.27 -0.0
123,926 + 10123 mRNA_1755 0.28 0.5
123,934 - 10123 mRNA_1755 0.28 0.5
123,942 + 10123 mRNA_1755 0.29 0.4
124,349 - 10123 mRNA_1755 0.67 0.2
124,497 + 10123 mRNA_1755 0.80 1.1
124,501 - 10123 mRNA_1755 0.81 0.6
124,634 - -0.1
124,640 - -3.1
124,781 - -0.1
124,798 - 1.7
124,813 - 0.2
124,818 - -0.3
124,853 - -0.6
124,960 - -2.0
125,073 - 10124 mRNA_1756 0.16 0.2
125,075 - 10124 mRNA_1756 0.16 -0.3
125,373 - 10124 mRNA_1756 0.38 2.8
125,397 - 10124 mRNA_1756 0.40 0.5
125,429 - 10124 mRNA_1756 0.42 -0.8
125,539 - 10124 mRNA_1756 0.51 2.4
125,562 - 10124 mRNA_1756 0.52 -0.2
125,567 + 10124 mRNA_1756 0.53 -2.1
125,827 + 10124 mRNA_1756 0.72 -0.2
125,889 + 10124 mRNA_1756 0.77 -0.2
125,943 + 10124 mRNA_1756 0.81 -0.2
125,948 + 10124 mRNA_1756 0.81 1.4
126,167 + 0.5
126,333 - 0.2
126,418 - -0.2
126,429 - -0.5
126,434 + -1.6
126,593 - -1.1
126,603 - 0.1
126,757 + 10125 mRNA_1757 0.15 0.9
126,880 - 10125 mRNA_1757 0.20 0.6
126,985 - 10125 mRNA_1757 0.24 0.6
127,023 - 10125 mRNA_1757 0.25 0.6
127,046 - 10125 mRNA_1757 0.26 1.4
127,146 - 10125 mRNA_1757 0.30 0.1