Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1752

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1751: 10119 - KOG2726 Mitochondrial polypeptide chain release factor, at 114675 to 115608 10119 mRNA_1752: 10120 - K15363 FAN1, MTMR15 fanconi-associated nuclease 1, at 115772 to 119229 10120 mRNA_1753: 10121 - BLAST ubiquitin ligase SCF complex subunit Cullin [Rhizocto..., at 119508 to 121647 10121

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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114,931 - 10119 mRNA_1751 0.27 0.9
114,946 + 10119 mRNA_1751 0.29 0.8
115,808 + 0.4
116,310 + 10120 mRNA_1752 0.16 -0.4
116,334 - 10120 mRNA_1752 0.16 0.4
116,390 + 10120 mRNA_1752 0.18 -0.2
116,779 - 10120 mRNA_1752 0.29 0.9
116,809 + 10120 mRNA_1752 0.30 0.7
116,904 + 10120 mRNA_1752 0.33 -0.2
116,945 + 10120 mRNA_1752 0.34 0.7
116,956 + 10120 mRNA_1752 0.34 -0.8
116,996 - 10120 mRNA_1752 0.35 0.5
117,139 + 10120 mRNA_1752 0.40 0.7
117,296 - 10120 mRNA_1752 0.44 0.2
117,300 + 10120 mRNA_1752 0.44 0.2
117,404 + 10120 mRNA_1752 0.47 1.9
117,425 + 10120 mRNA_1752 0.48 0.8
117,558 - 10120 mRNA_1752 0.52 1.3
117,593 + 10120 mRNA_1752 0.53 -0.0
117,993 + 10120 mRNA_1752 0.64 -0.7
118,445 + 10120 mRNA_1752 0.77 -0.1
118,849 + 10120 mRNA_1752 0.89 -0.2
119,011 - 1.1
119,018 + -0.2
119,020 - 0.8
119,155 + 0.7
119,233 - 2.8
119,282 - 1.0
119,312 + 0.4
119,314 + 0.5
119,330 - 0.2
119,343 + 0.9
119,444 - 0.0
119,446 - 0.1
119,459 + 1.4
119,470 + 0.5
119,604 + -1.5
119,729 - 10121 mRNA_1753 0.10 0.1
119,733 - 10121 mRNA_1753 0.11 -0.2
119,734 - 10121 mRNA_1753 0.11 -2.6
119,884 + 10121 mRNA_1753 0.18 -0.8
119,884 + 10121 mRNA_1753 0.18 0.3
119,893 + 10121 mRNA_1753 0.18 0.8
119,934 - 10121 mRNA_1753 0.20 1.1
119,992 - 10121 mRNA_1753 0.23 0.3
120,013 - 10121 mRNA_1753 0.24 0.4