Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1747

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1746: 10114 - KOG2897 DNA-binding protein YL1 and related proteins, at 104226 to 106402 10114 mRNA_1747: 10115 - Hypothetical Protein, at 106989 to 107598 10115 mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108076 to 110507 10116

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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106,560 - 1.7
106,581 + 1.6
106,719 - 0.2
106,730 - -1.7
106,742 + 0.3
106,886 + 0.1
107,024 + 1.1
107,368 - 10115 mRNA_1747 0.62 0.3
107,437 - 10115 mRNA_1747 0.73 0.6
107,453 + 10115 mRNA_1747 0.76 0.6
107,563 - 0.0
107,584 + -0.9
107,730 - -2.0
107,757 - 0.2
107,781 - 0.3
107,819 + 0.2
108,057 - -0.2
108,058 + -1.1
108,398 + 10116 mRNA_1748 0.13 2.2